Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0226 ATGCACACAAAAAACTCAACTTGCATCAAGAATCTGGTCACAAATGGCACCAGCTATCGCTGGTTCCGATCAGAAGCTTCAGCCTATGCTGAACTCATCGGAATATACGCTCGTGACGGAGCGTTGCATCAGGGCAAGAAGCTTCACGCGCACTTAATCACCACAGGCTTATATCGCTTCACCCACATTGCAACCAATCTCATAACCTTTTACGCGTGTTGTGGCCAACTCTCTCATGCACGAAAACTGTTCGACAAAATTCCTCAAACAAATGTTCACCGCTACATTGCCCTTATAGGAACCTGCGCTCGTTGTGGCTTCTATGACCACGCTCTAGCGGTTTTCTCCGAGATGCAAGCGACCCAAATGTTGAACACTCATAGCATATTCGTCATTCCAAGCGTTCTCAAAGCTTGCAGCCATGTCGGTGATCGAGTCACCGGAGAGAAAATACATGGATTGGTTTTGAAGTGTTCTTTTGATGTTGATGCTTTTGTGAACAGTGCTTTGATTGTTATGTACTCAAAGTGTGAAAGAGTTGAGGAAGCGTGCAAGGTTTTTGATGGAATGCCTGTGAAGGACTTGGTATCTCTGAATGCTGTTGTTTCTGGATGTGCTCAACTGGGTCTTTCGAATGAGGCATTGTCTTTGGTAAGAAGTATGGAGTTGCATGGTTTGAAGCCAAATATTGTAACTTGGAACATTTTGATATCTGGGTTTGCACAAAAATGTGACCTTGCCATGGTTTCTGAGATTTTCAGTTTGATGGTTGAAGATGGTATCGAGCCTGATGTAGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCACAACTTTAGGAATGAGGAAGCTTTAAATACGTTTAAGCAAATGTTGGGTCACATGTTGTGCCCAACCTCGAATACTATCAGCACCCTACTGCCAGCTTGTGCTACTGCAGCAAGAATGAGGCATGGGAAGGAGATTCATGGCTATGCCTTGGTGATTGGGGTGGAGGAAGATATATATGTCAGGAGTGCTCTGGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCGAGGACATTGTTCTATAAGATGCCGGAGAAGAACACAGTTACTTGGAACTCAATCATTTTTGGTTATGCAAATCATGGGTATTGCGAGGAAGCAATTGAGCTCTTCAATCAAATGGAGGTGGAGGGGAGAGCCAAGCTTGATCATTTAACTTTCACTGCAGCTCTCACTGCATGCAGCCATGCTGGTGAAATTGAACTTGGGCAAAGACTATTCGAGGTTATGCAAGAAAAGTACAGCATTGAGCCACGACTGGAACATTATGCATGCATGGTAGATCTTTTTGGTCGAGCAGGAAAAATTGATGAAGCGTATTGCATTATCAAGACAATGCCTATTGAACCTGATTTATTTGTATGGGGTGCATTACTCGCCGCTTGTAGAAATCATGGAAACGCGGAGCTTGCAGAAGTGGCTGCGCAACATTTGCTGAAATTAGAGCCTGAGAGTTCTGGGAACCGTCTGCTATTGTCCAGTGTATATGCAGATGCTGGCAAGTGGGGAAAGGTCGAGGGGATCAAGAAAACGATAAAGAAGGGAAGACACAGAAAATTTCAAGGGTTGAGTTGGATAGATAATATATAA 1644 0.438 MHTKNSTCIKNLVTNGTSYRWFRSEASAYAELIGIYARDGALHQGKKLHAHLITTGLYRFTHIATNLITFYACCGQLSHARKLFDKIPQTNVHRYIALIGTCARCGFYDHALAVFSEMQATQMLNTHSIFVIPSVLKACSHVGDRVTGEKIHGLVLKCSFDVDAFVNSALIVMYSKCERVEEACKVFDGMPVKDLVSLNAVVSGCAQLGLSNEALSLVRSMELHGLKPNIVTWNILISGFAQKCDLAMVSEIFSLMVEDGIEPDVVSWTSVISGFVHNFRNEEALNTFKQMLGHMLCPTSNTISTLLPACATAARMRHGKEIHGYALVIGVEEDIYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTWNSIIFGYANHGYCEEAIELFNQMEVEGRAKLDHLTFTAALTACSHAGEIELGQRLFEVMQEKYSIEPRLEHYACMVDLFGRAGKIDEAYCIIKTMPIEPDLFVWGALLAACRNHGNAELAEVAAQHLLKLEPESSGNRLLLSSVYADAGKWGKVEGIKKTIKKGRHRKFQGLSWIDNI* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0226 547 Pfam Pentatricopeptide repeat domain 216 277 IPR002885 -
Lan7g0226 547 Gene3D Tetratricopeptide repeat domain 339 546 IPR011990 GO:0005515
Lan7g0226 547 Gene3D Tetratricopeptide repeat domain 194 328 IPR011990 GO:0005515
Lan7g0226 547 Gene3D Tetratricopeptide repeat domain 17 144 IPR011990 GO:0005515
Lan7g0226 547 PANTHER OS03G0271300 PROTEIN 40 119 - -
Lan7g0226 547 PANTHER OS03G0271300 PROTEIN 89 546 - -
Lan7g0226 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lan7g0226 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Lan7g0226 547 Pfam PPR repeat family 364 413 IPR002885 -
Lan7g0226 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Lan7g0226 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 89 546 - -
Lan7g0226 547 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 40 119 - -
Lan7g0226 547 Pfam E motif 483 545 IPR046848 -
Lan7g0226 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Lan7g0226 547 Pfam PPR repeat 441 464 IPR002885 -
Lan7g0226 547 Pfam PPR repeat 65 87 IPR002885 -
Lan7g0226 547 Pfam PPR repeat 95 119 IPR002885 -
Lan7g0226 547 Pfam PPR repeat 168 193 IPR002885 -
Lan7g0226 547 TIGRFAM PPR: pentatricopeptide repeat domain 196 230 IPR002885 -
Lan7g0226 547 TIGRFAM PPR: pentatricopeptide repeat domain 231 265 IPR002885 -
Lan7g0226 547 TIGRFAM PPR: pentatricopeptide repeat domain 367 396 IPR002885 -
Lan7g0226 547 SUPERFAMILY TPR-like 321 504 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0226 Lan-Chr7 1401057 1402885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0226 77 545 Glycoside Hydrolase AT3G49170 31.287 1.02e-76 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0226 - - gmx:100790576 845.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0226 7 1401057 1402885 Lan7g0226 7 1401057 1402885 ECH