Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0101 ATGCCACCTCACAAACCTAACAAATCAAATCTCACTCATCTCTGCATTGTTAAGTCCCTTCTCAATGCTTCTTCTCGTGGCCACCTCTCTCAAGCTGTTTCTTCTCTCGACCTCTTACACCAGAAGGGTATTCGTTTACCCTCTCATATTCTTGCCACCCTCTTGCGCCATTGCTCCGATACCCGTTCCTACCGCGATGGAAAATTGGTCCACCTCCATTTGAAGCTTACCGGTTTCAAACGCCCCACCACGCTTTTGGCTAACCATTTGATCTGTATGTACTTCAGGTGTGGCGACTATGTTAATGCACGCAAGGTGTTTGATAAAATGGGTGTTAGAAATTTATACTCTTGGAACAATATGCTTTCTGGGTATGTTAAATTGGGCATGATCAAGCAAGCTAGGAGCTTGTTTTATAGAATGCCTGAAAGGGATTATGTATCATGGAATACGATGGTGGTTTGTTATGCACATAGTGGTATGCTTGGTGAGGCTTTGAGATATTATGTTGAGTTGAGGAGGTTGTCCATTGGGTATAATGAGTTTACCTTTGCCAGTGTGTTGATTGTTTGTGTTAAATTGAGAGAGTTTGACCTTTCTAGACAAATTCATGCACAGGTTTTAGTCGTTGGATTTTTGTCCAATGTGGTTGTATCCAGTTCAATTGTTGATGGTTATGCTAAGTGTGGAAAGATGGAAGATGCAAGGAGATTATTTGATGAGATGTCGGTGAGGGATATCCCTGCCTGGACGACATTAGTTTCGGGTTATGCCTCATCGGGGGACATGGAATCAGCGAATCAGCTGTTTAATCAGATGCCTCAGAAAAATTCGTATTCATGGACATGTTTGGTTAGTGGTTATGCTAGAAATGGTATGGGTCATGAAGCACTTGGAGTGTTTCGAAAGATGATCAAGCATCAAGTTAGACCTGATCAATTTACATTTAGTAGCTGCCTCTTTGCTTGTGGCAATATTGTTTCGTTGAAACATGGTAAAGAAATACATGCGTTTTTGGTGCGAAATAACTTCAGACCTAATACTATGGTTGTTAGTGCTATCGTTGACATGTATTCAAAATGTGGAAGCATGGAAACGGCCAAGCGGGTCTTTGATTTCATTGGAAATAAGCAAGACGTAGTGTTGTGGAATGCGATGATATCAGCGCTGGCCCACTTTGGCTATAGTGTAGAAGCAATTAGGTTGCTCAATGATATGCTAAGATCGGGAGTGAAGCCAAATAGGGTGACTTTTCTTGTCATTCTAAATGCTTGTAGTCATTCAGGTCTTGTGCAGGAAGGGTTTCAGTTTTTCATGTCCATGACTAGTGAGCATGGTGTTGTCCCAGACCAAGAACACTATGCATGCCTAATTGATCTTTTGGGTCAACCTAGATGCCTTAATGAATCCGTGAAGGATCTGCAGATGATGGATTGTAAGCGGGGTGACCATGTTTGGAACTCTTTGCCTGGTGTATGCAGAGTGTATGGGAATCTAGAACATAGAAGAGAAGTAGGTGATTTCTATGTTAAATTGCAGCCCCAATCCCCTGCTGCCTATGTATTACTTTCAAGTATATATGCTACACTTTTGAAATGGGGATTGAGTGATAAAGTAAGACAGACTATAGATGAAAGGCATGTGAGGAAAGATCCAGCAATTAGTTTAGAAATTGATGATAAGGCTCATTCTTACACTGTATCACTTGGGTCAAAGCCTCGGAATGAAACAATTTCCTCAGCTTCAGGCACTTAA 1755 0.4154 MPPHKPNKSNLTHLCIVKSLLNASSRGHLSQAVSSLDLLHQKGIRLPSHILATLLRHCSDTRSYRDGKLVHLHLKLTGFKRPTTLLANHLICMYFRCGDYVNARKVFDKMGVRNLYSWNNMLSGYVKLGMIKQARSLFYRMPERDYVSWNTMVVCYAHSGMLGEALRYYVELRRLSIGYNEFTFASVLIVCVKLREFDLSRQIHAQVLVVGFLSNVVVSSSIVDGYAKCGKMEDARRLFDEMSVRDIPAWTTLVSGYASSGDMESANQLFNQMPQKNSYSWTCLVSGYARNGMGHEALGVFRKMIKHQVRPDQFTFSSCLFACGNIVSLKHGKEIHAFLVRNNFRPNTMVVSAIVDMYSKCGSMETAKRVFDFIGNKQDVVLWNAMISALAHFGYSVEAIRLLNDMLRSGVKPNRVTFLVILNACSHSGLVQEGFQFFMSMTSEHGVVPDQEHYACLIDLLGQPRCLNESVKDLQMMDCKRGDHVWNSLPGVCRVYGNLEHRREVGDFYVKLQPQSPAAYVLLSSIYATLLKWGLSDKVRQTIDERHVRKDPAISLEIDDKAHSYTVSLGSKPRNETISSASGT* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0101 584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 449 IPR002885 -
Lan7g0101 584 Gene3D Tetratricopeptide repeat domain 424 545 IPR011990 GO:0005515
Lan7g0101 584 Gene3D Tetratricopeptide repeat domain 190 276 IPR011990 GO:0005515
Lan7g0101 584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Lan7g0101 584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 249 275 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 221 248 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 116 146 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 416 450 IPR002885 -
Lan7g0101 584 TIGRFAM PPR: pentatricopeptide repeat domain 147 177 IPR002885 -
Lan7g0101 584 Pfam PPR repeat family 276 323 IPR002885 -
Lan7g0101 584 Pfam PPR repeat family 379 426 IPR002885 -
Lan7g0101 584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Lan7g0101 584 SUPERFAMILY TPR-like 93 306 IPR011990 GO:0005515
Lan7g0101 584 Pfam PPR repeat 147 175 IPR002885 -
Lan7g0101 584 Pfam PPR repeat 116 145 IPR002885 -
Lan7g0101 584 Pfam PPR repeat 88 113 IPR002885 -
Lan7g0101 584 Pfam PPR repeat 220 245 IPR002885 -
Lan7g0101 584 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Lan7g0101 584 Gene3D Tetratricopeptide repeat domain 285 423 IPR011990 GO:0005515
Lan7g0101 584 Gene3D Tetratricopeptide repeat domain 17 176 IPR011990 GO:0005515
Lan7g0101 584 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 141 566 - -
Lan7g0101 584 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0101 Lan-Chr7 541827 544194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0101 129 578 Glycoside Hydrolase AT3G49170 31.429 2.60e-75 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0101 - - lja:Lj3g3v3500060.1 820.846