Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1785 ATGCATTCACTAGCTCTTAAAACCAACATGGCCATTCATAGATTCATGATCACACACATTTTGATTTTGATAATGAGTTTCAACTCTCATGCAATAATTGGATCTTCTAAGGTAATATATCCAAAATCACACAAAGGAGGAAGTGTTAGAAGTGCTTATTGGCCTTCGGGTGATGACTTCTCACCTTCTTCCATTGAAACAAAATATTTTACCCATATATATTACGCTTTTGTCGAGCTTGAACCGGATTCATTCAAGCTCGACATAACCGACTCTGATAAAAAATGGATACAAGAGTTTATCGGCGGACTTCATAATCGTCACCCGCCGGTGAAAACTATATTATCCATTGGAGGAGGAGGTAGCAACTCCACTTTGTTTTCTATCATGGCTAGCACCAAGCAAAATAGAGAAAATTTCATAAACTCTACTATCCAAGTGGCACACAAATATGGCTTCAATGGTCTTGACTTGGATTGGGAGTTTCCAGAAGATGAAAAAGACATGGCCAACCTTGGTATCTTGTTCAAGGAATGGCACCAAGCTTTTGTTTTGGATGCTCAGGTTCACAGGACACAACGTTTGCTTTTGACTGCTGCAGTTTATTATGCCAACACAATAAAGATTATAGGTAATGGGCCAAGATCATACCCAGCCCAAGCCATTAGTGAGTATTTGGATTGGGCTAGCCCAATGTGCTTTGATTATCATGGTTCATGGGACAATTTTACTGGCTTTAATGCTGCATTATATGATCCAAATTCTAACATAAGTACCCATTATGGAATCGGATCTTGGATCAAATCCGGTGTTCCGCCCACAAAGCTGGTAATGGGGTTATCGTTATATGGGCGGACATGGAAACTCCAAGATCCAAATAATCACGGGGTTGGAGCACTAGCGGTTGGTCCAGCCACCGATACGGAAGGAACTTTAGACTATGATGAGATTTTGAAGTTTAATGAAGAGAATGGTGCACATGTAGTGTATGATGAGTTAAATGTGTCTTACTATTCTTATGTGGATACTACTTGGATTAGCTATGATGATGGACCTTCAATAACAAAGAAGGTTCAATTCATTCGACTAAGGGGCTTGAAAGGTTATTTCTTTTGGGCTCTTGGAAAGGACAAGGATTGGACAATCTCAAAACAAGCTTCCAATGCATTGGGACAGTGA 1179 0.3995 MHSLALKTNMAIHRFMITHILILIMSFNSHAIIGSSKVIYPKSHKGGSVRSAYWPSGDDFSPSSIETKYFTHIYYAFVELEPDSFKLDITDSDKKWIQEFIGGLHNRHPPVKTILSIGGGGSNSTLFSIMASTKQNRENFINSTIQVAHKYGFNGLDLDWEFPEDEKDMANLGILFKEWHQAFVLDAQVHRTQRLLLTAAVYYANTIKIIGNGPRSYPAQAISEYLDWASPMCFDYHGSWDNFTGFNAALYDPNSNISTHYGIGSWIKSGVPPTKLVMGLSLYGRTWKLQDPNNHGVGALAVGPATDTEGTLDYDEILKFNEENGAHVVYDELNVSYYSYVDTTWISYDDGPSITKKVQFIRLRGLKGYFFWALGKDKDWTISKQASNALGQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1785 392 PANTHER CHITINASE 39 390 - -
Lan6g1785 392 Gene3D Glycosidases 63 378 - -
Lan6g1785 392 SUPERFAMILY Chitinase insertion domain 283 348 IPR029070 -
Lan6g1785 392 SMART 2g34 48 377 IPR011583 GO:0008061
Lan6g1785 392 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 153 161 IPR001579 GO:0004553|GO:0005975
Lan6g1785 392 SUPERFAMILY (Trans)glycosidases 50 391 IPR017853 -
Lan6g1785 392 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 48 392 IPR001223 GO:0005975
Lan6g1785 392 Pfam Glycosyl hydrolases family 18 52 377 IPR001223 GO:0005975
Lan6g1785 392 Gene3D - 282 348 IPR029070 -
Lan6g1785 392 CDD GH18_plant_chitinase_class_V 49 383 - -
Lan6g1785 392 PANTHER CLASS V CHITINASE CHIT5A 39 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1785 Lan-Chr6 29172060 29174600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1785 49 389 Glycoside Hydrolase AT4G19810 39.650 6.47e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1785 K01183 - gmx:100787511 578.17