LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g1771	ATGAACAAATTCAATTCATTCCCAAACATCAAAACCAATCTATCATTATTATTATCTCATCATTCAATCACAATCACAACCTTAACCTTATCAAACCTCAAACAACAACAAACACAAACCTCAAAACAAAGAGTTTCTGAACAAACATGTTTATCACTACTTCATTCTTGTACCACTCTCACTTCACTCACTCAAATCCATTCACTCATTCTCAAATTGGGTCTTCATCAAAACCCTTTAGTTCTCACCAAATTTGCATCCACCTCATCAAATTTCAACTCCATAAACTATGCTTCATCATTTATATTCCCTTATGACCCAAATGCCCATAATGCAGACCCACCATTGTTTTATGATGCATTCCTTTTCAACACTGTTATTAGAGCTTATGCTCAAACTCTTAACTCAAAGTCACTGGCTTTGCATTTTTATAAAACCATGCTATGTTATGGGGTTTTGCCTAATAAGTTTACTTACCCTTTTGTTCTTAAGGCTTGTGCTGGCATTGGTGGATTGAATTTGGGTAAATCGGTACATGGGTTTGTGGTAAAATTGGGTTTTGAGGATGATCTTCATGTCCAGAATACTATGATTCATATGTATTGTTGTTGTGAGGGAGAGGTTGAGTTTGCGCGGAAGGTGTTTGAGGGAAGTCCTAAGTCGGATTCGGTGACGTGGAGTGCGATGATTGGTGGGTATGCGCGGTCAGGGCATTCTGCAGAGGCTGTTGGGTTGTTTAGGGAAATGCAGGTTGAGGGAGTTTGTCCTGATGAGATCACCATGGTTTCGGTTTTGTCGGCTTGTACGGATTTGGGTGCCCTTGAGTTGGGGAAGTGGTTGGAATCTTATGTTGACAGGATGAAGATAACAAAGTCGTTGGAATTGTGTAATGCGCTGATTGACATGTTTGCGAAGTGCGGCGATGTTGACAAAGCTATGAAACTGTTTAGAAGAATGAGCACAAGCACCATTGTTTCGTGGACTTCGGTAATCGATGGTTTGGCGATGCACGGTCGCGGATTAGAAGCTGTTTCCTTGTTCGATGAGATGGTTGAACAAGGGGTGGCCCCTGATGATGTTGCATTCATTGGGGTGCTCTCTGCTTGTAGCCACTCCGGGCTAGTTGATAAGGGACATTACTATTTCAATTCAATGGAGAAGAATTTCGGCATTGTCCCAAAGATAGAACACTGTGGATGCATGGTGGATTTGTTGAGTAGGGCTGGACTTGTCAAAGAGGCAGTAGAATTTGTCCAAAATATGCCTATTGAACCAAACCAAATCATATGGAGGAGCATAATAACTGCTTGCCATGCGCGCGGTGAACTCAAGCTTGGAGAGACCATATCAAAAGAGTTAATCAAAAGTGAGCCGATGCATGAATCTAATTATGTTTTGCTTTCAAACATTTATGCGAAGTTGCTACGATGGGAGAAGAAGACCAAGGTTAGGGAAATGATGGATATGAAAGGGATGAAGAAGATTCCAGGGAGCACCATGATTGAGCTAAACAACGAAATGTACGAGTTTGTTGCCGGTGATAAGTCGCATGATCAGTACAAAGAAATATATGAAATGGTCGATGAGATGGGAAGGGAGATAAAGAGGGCAGGGTATGTCCCTACAACGTCACAGGTATTGCTCGACATTGATGAAGAAGATAAAGAAGATGCTTTGCATAGACACAGTGAAAAGCTTGCTATAGCTTTTGCTCTTTTGAATACTAATCCTGGAACACCTATTAGAATTGTGAAGAACTTGCGCGTATGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAAGTTTACAACCGAGAGATTGTGGTGAGGGACCGTAATCGTTTCCACCATTTCAAGAATGGTTTGTGCTCCTGCAGAGATTTCTGGTGA	1893	0.4126	MNKFNSFPNIKTNLSLLLSHHSITITTLTLSNLKQQQTQTSKQRVSEQTCLSLLHSCTTLTSLTQIHSLILKLGLHQNPLVLTKFASTSSNFNSINYASSFIFPYDPNAHNADPPLFYDAFLFNTVIRAYAQTLNSKSLALHFYKTMLCYGVLPNKFTYPFVLKACAGIGGLNLGKSVHGFVVKLGFEDDLHVQNTMIHMYCCCEGEVEFARKVFEGSPKSDSVTWSAMIGGYARSGHSAEAVGLFREMQVEGVCPDEITMVSVLSACTDLGALELGKWLESYVDRMKITKSLELCNALIDMFAKCGDVDKAMKLFRRMSTSTIVSWTSVIDGLAMHGRGLEAVSLFDEMVEQGVAPDDVAFIGVLSACSHSGLVDKGHYYFNSMEKNFGIVPKIEHCGCMVDLLSRAGLVKEAVEFVQNMPIEPNQIIWRSIITACHARGELKLGETISKELIKSEPMHESNYVLLSNIYAKLLRWEKKTKVREMMDMKGMKKIPGSTMIELNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALHRHSEKLAIAFALLNTNPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW*	631

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g1771	630	Pfam	DYW family of nucleic acid deaminases	538	630	IPR032867	GO:0008270
	Lan6g1771	630	Gene3D	Tetratricopeptide repeat domain	122	293	IPR011990	GO:0005515
	Lan6g1771	630	Gene3D	Tetratricopeptide repeat domain	296	509	IPR011990	GO:0005515
	Lan6g1771	630	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	323	357	IPR002885	-
	Lan6g1771	630	Pfam	PPR repeat	296	320	IPR002885	-
	Lan6g1771	630	Pfam	PPR repeat	399	421	IPR002885	-
	Lan6g1771	630	Pfam	E motif	442	502	IPR046848	-
	Lan6g1771	630	TIGRFAM	PPR: pentatricopeptide repeat domain	364	393	IPR002885	-
	Lan6g1771	630	TIGRFAM	PPR: pentatricopeptide repeat domain	325	358	IPR002885	-
	Lan6g1771	630	TIGRFAM	PPR: pentatricopeptide repeat domain	295	321	IPR002885	-
	Lan6g1771	630	TIGRFAM	PPR: pentatricopeptide repeat domain	224	258	IPR002885	-
	Lan6g1771	630	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	292	322	IPR002885	-
	Lan6g1771	630	PANTHER	-	48	616	-	-
	Lan6g1771	630	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	222	256	IPR002885	-
	Lan6g1771	630	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	119	154	IPR002885	-
	Lan6g1771	630	Pfam	E+ motif	508	534	IPR046849	-
	Lan6g1771	630	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	48	616	-	-
	Lan6g1771	630	Pfam	PPR repeat family	222	268	IPR002885	-
	Lan6g1771	630	Pfam	PPR repeat family	324	370	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g1771	Lan-Chr6	28992940	28995293	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g1771	123	630	Glycoside Hydrolase	AT3G49170	37.817	4.35e-127	393

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g1771	-		-	lang:109350726	1243.8