Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1757 ATGGTTCATCAGAGTCACATTCTCTCTTACAACGTTACACTCTCTTCTTTCTCTTATACTCCTCCAATACGACGTCGTTTTATTAGAACCGCTACTCCTTCTAGAACAACAACCAATCTCAGGCGTCTCACCTCTCGTATCGTTCAACTCACGCGCCGCAAACAGCTTCGTCAGATATTGGAAGAGGTTGAGGATGCAAAGAGAGATTATGGGAAGGTGAACACAATAGTGATGAACGCAGTGATGGAGGCTTGTGTTCGTTGCAGTGACATTGACTTAGCAATTAAGATATTTGATGAGATGAAAAGCCCACACCAGGGTTGTGGTGTTGATACTGTTACCTATGCCACACTTTTGAAGGGGTTAGGTGAGGCACGAAGAATCGATGAAGCTTTTCAATTGCTTGAATCTGTGGAAAATGGTATGGCCACAGGAAGTCCAAAGCTGTCAGCTGGATTGATCTTTGGTCTTCTAAATGCCTTAATTGACGCTGGAGACTTGCGTCGTGCAAATGGCCTCCTTGCACGTTATGGTTTTGTCCTTCGTGAAGATGGCAATTTTTCAATCTCAGTATACAACTTACTAATGAAGGGGTATATAAACTCAGGCTTCCCGCAAACTGCAATAAACATGCTCAATGAAATACTACATGAAGGAATAGTGCCTGACAGGCTCACATATAATACACTAATTTTAGCATGCGTCAAGAGTGGAAAGTTGGATACTGCAATGCAATTTTTTGAGGAAATGAAGGGAGAAGCACAGAAATCCATTAATGATGATCTGGTTCCAGATATTGTCACATATACGACATTGCTCAAGGGTTTTGGGCAGGCAAAGGATCTCACTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCATGTCATGAGTTGTACATTGATAGAACTGCTTACACTGCAATAGTTGATGCTTTACTGAAATGTGGCGCATTTATGGGTGCTCTGTGTATATTTGGAGAAATACTGAAGCTGTCTGGTTGGAGACCAGAATTAAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTGGAGGGGATTATGATCTAGTTAAAAATTTGTATAAGCGGATTTGGCCAGATTCTGCAGGAACTATCTTACCAGTTGCCCAAGAAGAAGCCGATCACCTTCTCATGGAAGCAGCACTAAATGCAGGCCAGGTTGATGTTGCTATTAAAACTCTTACCGGTATTATTTCAAGATGGAAGGGCATATCATGGACAACTCGTGGAGGCCTGGTTGCTATGCGTATTGAAGCCATGTCGGGGTTCTCAAAGTCTGTATTCAGTCCTTACTTACTTCCTCAGGTTTCACCTTCTGAACCGGTTGAGAGTTTCATGATACCATTTGAAGCAACACAGCCACTACAAGGTACCATAAAGCTGGAGAAAGTGGTTACCCGTTTCATTAATGATGCAGTTGTTCCAATTGTAGATGAGTGGGGCAGCTGTATTGGGATCTTGCACCGTGAAGACTGCAATCAGCTGGATGCATCACTTTCAACAATGATGAGAAGCCCTCCTCCTTGTGTTACAATTTCAACATCTATTGGTCATGTAGTTGATTTAATGTTGGAGAAGAGGTACCCAATGGTTATCATTGTAAAATACACTGACTCATATGCTACTTCATACAGTTCTAGAGCAGTTGGAGTTTTTACATCAGAACAATTGAATAGGCTTATCACACCTGTATCTGAATCAAAAGGGACACACATTTCTCTCCATGGAAGATAA 1767 0.4194 MVHQSHILSYNVTLSSFSYTPPIRRRFIRTATPSRTTTNLRRLTSRIVQLTRRKQLRQILEEVEDAKRDYGKVNTIVMNAVMEACVRCSDIDLAIKIFDEMKSPHQGCGVDTVTYATLLKGLGEARRIDEAFQLLESVENGMATGSPKLSAGLIFGLLNALIDAGDLRRANGLLARYGFVLREDGNFSISVYNLLMKGYINSGFPQTAINMLNEILHEGIVPDRLTYNTLILACVKSGKLDTAMQFFEEMKGEAQKSINDDLVPDIVTYTTLLKGFGQAKDLTSVLKIVLEMKSCHELYIDRTAYTAIVDALLKCGAFMGALCIFGEILKLSGWRPELRPKPHLYLSMMRAFAFGGDYDLVKNLYKRIWPDSAGTILPVAQEEADHLLMEAALNAGQVDVAIKTLTGIISRWKGISWTTRGGLVAMRIEAMSGFSKSVFSPYLLPQVSPSEPVESFMIPFEATQPLQGTIKLEKVVTRFINDAVVPIVDEWGSCIGILHREDCNQLDASLSTMMRSPPPCVTISTSIGHVVDLMLEKRYPMVIIVKYTDSYATSYSSRAVGVFTSEQLNRLITPVSESKGTHISLHGR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1757 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 336 IPR002885 -
Lan6g1757 588 Pfam PPR repeat 219 251 IPR002885 -
Lan6g1757 588 Pfam Pentatricopeptide repeat domain 259 294 IPR002885 -
Lan6g1757 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 104 IPR002885 -
Lan6g1757 588 Gene3D Tetratricopeptide repeat domain 146 277 IPR011990 GO:0005515
Lan6g1757 588 Gene3D Tetratricopeptide repeat domain 278 373 IPR011990 GO:0005515
Lan6g1757 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Lan6g1757 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 141 IPR002885 -
Lan6g1757 588 SUPERFAMILY CBS-domain pair 453 567 IPR046342 -
Lan6g1757 588 TIGRFAM PPR: pentatricopeptide repeat domain 267 295 IPR002885 -
Lan6g1757 588 TIGRFAM PPR: pentatricopeptide repeat domain 113 137 IPR002885 -
Lan6g1757 588 TIGRFAM PPR: pentatricopeptide repeat domain 226 251 IPR002885 -
Lan6g1757 588 TIGRFAM PPR: pentatricopeptide repeat domain 78 103 IPR002885 -
Lan6g1757 588 TIGRFAM PPR: pentatricopeptide repeat domain 191 223 IPR002885 -
Lan6g1757 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 295 IPR002885 -
Lan6g1757 588 Pfam CBS domain 513 565 IPR000644 -
Lan6g1757 588 ProSiteProfiles CBS domain profile. 513 580 IPR000644 -
Lan6g1757 588 CDD CBS_pair_SF 485 545 - -
Lan6g1757 588 Pfam PPR repeat family 74 122 IPR002885 -
Lan6g1757 588 PANTHER OS09G0431600 PROTEIN 13 581 IPR044781 -
Lan6g1757 588 Gene3D Tetratricopeptide repeat domain 27 141 IPR011990 GO:0005515
Lan6g1757 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1757 49 367 Miscellaneous Gene Families AT4G11690 23.242 7.15e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1757 - - gmx:100813146 877.47