Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0935 ATGGCGCCAGTATCAGCACTTGCAAAGTACAAATTGGTGTTCTTAGGTGATCAATCTGTGGGCAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGATAACACTTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTATGGGATACAGCTGGACAGGAAAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGACTCATCTGTTGCTGTCATCGTTTATGATGTTGCAAGTCGTCAGACTTTCCTAAATACATTAAAGTGGATTGAAGAGGTGCGCAGTGAGAGAGGCAGCGATGTCATTGTTGTTCTCGTTGGGAACAAAACTGACCTTGTGGATAAGAGGCAAGTCTCTACAGAGGAAGGGGAAACAAAGGCCCGTGAACTGAACGTTATGTTTATTGAAGCTAGTGCCAAAGCTGGCTTTAATATAAAGGCCCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTTCCACCAAACAAGAAGAATTGGTTGATGTGAACCTGTCTTCTGCTGGCCGTGACTCTCAATCATCTGGTGGATGTGCTTGCTGA 615 0.4228 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTLKWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGETKARELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEELVDVNLSSAGRDSQSSGGCAC* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0935 204 Gene3D - 6 199 IPR027417 -
Lan6g0935 204 ProSiteProfiles small GTPase Ras family profile. 5 204 IPR001806 GO:0003924|GO:0005525
Lan6g0935 204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Lan6g0935 204 SMART rab_sub_5 10 173 - -
Lan6g0935 204 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Lan6g0935 204 ProSiteProfiles small GTPase Rab1 family profile. 5 204 - -
Lan6g0935 204 CDD Rab6 10 170 - -
Lan6g0935 204 PRINTS Transforming protein P21 ras signature 10 31 - -
Lan6g0935 204 PRINTS Transforming protein P21 ras signature 33 49 - -
Lan6g0935 204 PRINTS Transforming protein P21 ras signature 51 73 - -
Lan6g0935 204 PRINTS Transforming protein P21 ras signature 113 126 - -
Lan6g0935 204 PRINTS Transforming protein P21 ras signature 148 170 - -
Lan6g0935 204 PANTHER GTP-BINDING PROTEIN RAB6 1 204 - -
Lan6g0935 204 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Lan6g0935 204 SMART ran_sub_2 15 201 - -
Lan6g0935 204 SMART ras_sub_4 7 173 - -
Lan6g0935 204 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Lan6g0935 204 PANTHER DRAB5-RELATED 1 204 - -
Lan6g0935 204 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0935 Lan-Chr6 8753357 8758669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0935 10 198 EF-hand Containing Proteins AT3G63150 22.564 7.57e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0935 K07893 - gmx:100527651 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0936 18 14627062 14630360 Lan6g0935 6 8753357 8758669 PCT
Lan6g0313 6 2401891 2405085 Lan6g0935 6 8753357 8758669 PCT
Lan6g0935 6 8753357 8758669 Lan18g0936 18 14627062 14630360 PCT
Lan6g0935 6 8753357 8758669 Lan6g0313 6 2401891 2405085 PCT