Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0312 ATGCGCGCTGCCACTTTCAAACGCTTCCCAATTTCTCATTTTTCCAATGTCTCTTCCAATCTTCACTCTCACTCTAACCATTCTCATTCCTTCAAAACTCCGTTCTCAAATCCCATAATCAATTACCCAAATTCCACTTCCACTTGCAATGACTCTTTACTCCTCCACTTTCTATCAATGGGATTGCACCATGAGGCTCGAAACCTTCTTCACAAATTCTCCAAAGGAAGAGACCTCCATGGACGTGTTGTTTACTGGACTTCCTTGCTCACCAAGTATTCTCGCGATGGTTTCATTAATGAGGCTCGAATGCTGTTCGACATAATGCCTCACAGAAATATTGTTACTTGGAACTCTATGCTGTCGGGTTACCTGCAATCTGGCATGCTGAATGAGGCTTCCTGGGTTTTTGAGACCATGCCGGAGAGGAATGTTGTTTCTTGGACTGCAATGCTTAGTGGGTTAGCAGATGCAGGCAGGATCGAAGATGCGAGAAGAGTATTTGATGAAATGCCGGAGAAGAATGTGGTTTCTTGGAATTCCATGGCGGCGGGGTTGATTAGGAATGGAGACTTGGATGAAGCCAGGGTGGTTTTTGAACAGACCCCTGATAAAAATGTGGCTTCTTGGAATGCTATGATTGCGGGTTACATTGAAAATGATAGAAATGATGAAGCAAGAGTCTTGTTTGATGAGATGAAATGTAGGAACGTGATTACTTGGACTAGCATGATATCTGGTTATTGTCGAGAGGGCAGCATGGAAGAGGCTTATTGCTTGTTCCGGAAAATGCCGGAGAAAAATGTTGTTTCTTGGACAGCCATGATTGGTGGGTTCACCTGGAATAGCTTGTTTCAAGAGGCACTATTGCTTTTCCTTGAGATGATACTTTCTGGAGCAAAACCAAATGGGGAGACCTTTATCTCTATCATATATGCATGTGCTGGTTTGGGTTTTCCTTTTCTTGGGAAACAATTACATGCACAGTTAATTGTTAACAGCTGGAAGCTTGATGATTATGACTGTAGGTTAAGTAGAAGTCTCGTTCGGATGTACTCTGTGTTAGGTCTTATGGACTATGCTCACAATATATTTGAGGGTGATCTGAGTTACTGTGATGATCAGTCTTTCAATTCTATGATAAATGGTTATGTTCAGTCTGGTCAGTTAGAAAGGGCTCAGGATTTGTTTGACAGAGTACCCATCCAAAATAAAATTGCATGGACTTGTATGGTTGCCGGCTATCTCAGTGCTGGGCAAGTATTGAAGGCATGCAATCTCTTTAATAAAATGCCTGACAGGGATTCAATTGCATGGACTTCAATGATTTATGGGTATGTCCAAAATGAGCTGATTGCTGAAGCCATCAGCCTATTTGCAGAAATGATGGGTCATGGTGTTTTGCCTATGAATTCTACATATGCTGTTCTTTTCGGAGCCATTGGTTCCATAGCATATCTTGATCAGGGGCGGCAATTGCATGGTATGCAGTTGAAGACAATATATGAGTACGATTTGATTCTTGAGAATTCCCTAATTTCAATGTATGCAAAATGTGGGGAGATAGATGATGCATGCAGAATATTCTCTAACATGACTTACTGGGATAAAATTTCTTGGAACACCATAATCATGGGCCTTTCAGATCATGGGAGGGCTAGTGAAAGTTTAAAGATGTATGAAACTATGATCGAATTTGGGATTTACCCAGATTCTGTTACTTTCCTTGGTGTCCTGACAGCATGTGCTCATTCAGGTCTTGTTGATAAAGGGTGGGAGTTATTCAATACCATGGTCAATGATTATGCACTTCAACCTGGTCTGCAACATTACATTAGTATGATCAATCTTCTTGGCCGAGCCGGGAAGGTGAAGGATGCAGAGGAGTTTGTCTTGAGACTACCTATTGAACCAAATCATGCCATTTGGGGAGCATTGATTGGGGTGTGTGGATTGAGTAAAACTGATACAGATGTAGCTAGGCGTGCAGCCGAACGACTGCTTGAGTTGGATCCTTTAAATGCACCAGGCCACGTGGCCCTTTGTAACATATATGCCGCAAATGATAGACACACAGAGGAGACAAGTTTGAGAAAAGAAATGAGGCTGAAAGGAGTGAGGAAGGTACCCGGGTGTAGTTGGATATTAGTGCAGGGGAGAGTTCATGTTTTCTCACCTGGAGATAGATCAGAACCACTAGTAAAAGACATGTTACTAGAAGTTTGA 2226 0.4218 MRAATFKRFPISHFSNVSSNLHSHSNHSHSFKTPFSNPIINYPNSTSTCNDSLLLHFLSMGLHHEARNLLHKFSKGRDLHGRVVYWTSLLTKYSRDGFINEARMLFDIMPHRNIVTWNSMLSGYLQSGMLNEASWVFETMPERNVVSWTAMLSGLADAGRIEDARRVFDEMPEKNVVSWNSMAAGLIRNGDLDEARVVFEQTPDKNVASWNAMIAGYIENDRNDEARVLFDEMKCRNVITWTSMISGYCREGSMEEAYCLFRKMPEKNVVSWTAMIGGFTWNSLFQEALLLFLEMILSGAKPNGETFISIIYACAGLGFPFLGKQLHAQLIVNSWKLDDYDCRLSRSLVRMYSVLGLMDYAHNIFEGDLSYCDDQSFNSMINGYVQSGQLERAQDLFDRVPIQNKIAWTCMVAGYLSAGQVLKACNLFNKMPDRDSIAWTSMIYGYVQNELIAEAISLFAEMMGHGVLPMNSTYAVLFGAIGSIAYLDQGRQLHGMQLKTIYEYDLILENSLISMYAKCGEIDDACRIFSNMTYWDKISWNTIIMGLSDHGRASESLKMYETMIEFGIYPDSVTFLGVLTACAHSGLVDKGWELFNTMVNDYALQPGLQHYISMINLLGRAGKVKDAEEFVLRLPIEPNHAIWGALIGVCGLSKTDTDVARRAAERLLELDPLNAPGHVALCNIYAANDRHTEETSLRKEMRLKGVRKVPGCSWILVQGRVHVFSPGDRSEPLVKDMLLEV* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lan6g0312 741 SUPERFAMILY TPR-like 158 692 IPR011990 GO:0005515
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 236 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 376 399 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 611 631 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 86 114 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 407 434 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 270 299 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 177 201 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 146 176 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 239 269 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 115 145 IPR002885 -
Lan6g0312 741 Pfam PPR repeat 510 532 IPR002885 -
Lan6g0312 741 Pfam E motif 656 715 IPR046848 -
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 203 270 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 30 116 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 271 728 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 117 206 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 117 206 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 271 728 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 30 116 - -
Lan6g0312 741 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 203 270 - -
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 143 IPR002885 -
Lan6g0312 741 Gene3D Tetratricopeptide repeat domain 41 174 IPR011990 GO:0005515
Lan6g0312 741 Gene3D Tetratricopeptide repeat domain 282 402 IPR011990 GO:0005515
Lan6g0312 741 Gene3D Tetratricopeptide repeat domain 488 726 IPR011990 GO:0005515
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 376 399 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 239 270 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 438 469 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 407 434 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 115 146 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 177 201 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 209 237 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 146 176 IPR002885 -
Lan6g0312 741 TIGRFAM PPR: pentatricopeptide repeat domain 510 532 IPR002885 -
Lan6g0312 741 Gene3D Tetratricopeptide repeat domain 403 487 IPR011990 GO:0005515
Lan6g0312 741 Gene3D Tetratricopeptide repeat domain 203 270 IPR011990 GO:0005515
Lan6g0312 741 Pfam PPR repeat family 435 480 IPR002885 -
Lan6g0312 741 Pfam PPR repeat family 205 238 IPR002885 -
Lan6g0312 741 Pfam PPR repeat family 538 583 IPR002885 -
Lan6g0312 741 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0312 Lan-Chr6 2398621 2400984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0312 28 732 Glycoside Hydrolase AT3G49170 30.497 9.08e-97 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0312 - - gmx:102669560 1105.89