Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1206 ATGACCGCCACCATCTCCGTTCAACTTTCAGCCCCTACTCGCCGTTCTCTCAACTCCTCCGTTAATCTCCGTCATCAATTTTCTACTTCTCATTCCACTTTCGCCACGCTTCAACGTAACTTCCAATTCCCTCGTTCTCGCATCACTGTTTCTTCTTCTTCTTCAATGAGCATTGATGCTCCTCTCAAAACCTCTTCCTCTTCGTTCCTCGATCGCAGAGACACTCCGTTTCTACACTTCGCAAAGTTTCACGGCCTCGGAAACGACTTCGTTTTGGTTGATAATAGAGACACTATTGAGCCTAAGATAAGTCCTGAGAAAGCTGTTCAACTATGCGACCGTAACTTCGGTGTTGGTGCTGATGGGGTTATCTTTGTCTTGCCTGGTATCAATGGCACTGACTATACTATGAGGATTTTTAATTCAGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTCAGATGTTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGTTTTACCGTACATACTGGCGCTGGGCTGATTGTTCCTGAAGTTCTTGAGGATGGAAATGTCAGAGTAGATATGGGGGAACCAGTTCTTAAAGCATCAGATGTGCCTACTAAGCTGTCTCCAAACAAGGATCATGCTGTTGTTAAATCGGAGCTAGATGTAGATGGGGTTATCTGGAATGTGACTTGTGTTAGCATGGGAAATCCACACTGTATAACTTTCAGTGGAAAAGGATTTGAGAATTTGTTTGTTGATGAGTTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCAGCACGAACAAACACAGAGTTTGTGCAAGTTCTGTCCGAGTCTCACCTAAAGATGCGTGTTTGGGAGCGAGGAGCAGGAGCAACTCTAGCATGCGGAACTGGAGCTTGTGCTACGGTTGTTGCAGCAGTTCTTGAAGGTCGTTCTGGGAGGAACTGCACGGTTGATCTACCTGGGGGCCCTCTTCAGATTGAGTGGAGGGAGGAAGATAATCATGTCTATATGACAGGCTCAGCAGAACTAGTTTATTACGGTTCTTTGCCACTTTAA 1089 0.4518 MTATISVQLSAPTRRSLNSSVNLRHQFSTSHSTFATLQRNFQFPRSRITVSSSSSMSIDAPLKTSSSSFLDRRDTPFLHFAKFHGLGNDFVLVDNRDTIEPKISPEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTVHTGAGLIVPEVLEDGNVRVDMGEPVLKASDVPTKLSPNKDHAVVKSELDVDGVIWNVTCVSMGNPHCITFSGKGFENLFVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSESHLKMRVWERGAGATLACGTGACATVVAAVLEGRSGRNCTVDLPGGPLQIEWREEDNHVYMTGSAELVYYGSLPL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1206 362 Pfam Diaminopimelate epimerase 80 201 IPR001653 GO:0008837|GO:0009089
Lan5g1206 362 Pfam Diaminopimelate epimerase 234 355 IPR001653 GO:0008837|GO:0009089
Lan5g1206 362 ProSitePatterns Diaminopimelate epimerase signature. 141 155 IPR018510 GO:0005737|GO:0008837|GO:0009089
Lan5g1206 362 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 31 361 - -
Lan5g1206 362 SUPERFAMILY Diaminopimelate epimerase-like 222 360 - -
Lan5g1206 362 TIGRFAM DapF: diaminopimelate epimerase 79 360 IPR001653 GO:0008837|GO:0009089
Lan5g1206 362 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 52 209 - -
Lan5g1206 362 SUPERFAMILY Diaminopimelate epimerase-like 78 207 - -
Lan5g1206 362 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 31 361 IPR001653 GO:0008837|GO:0009089
Lan5g1206 362 Hamap Diaminopimelate epimerase [dapF]. 78 362 IPR001653 GO:0008837|GO:0009089
Lan5g1206 362 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 213 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1206 Lan-Chr5 25990042 25994951 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1206 K01778 - gmx:100807528 575.859