Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1056 ATGAAATTCGAATGTGTATTCAAAGAGTATCTGCAAGAAGAGAAAGAGGGGATGTTGGACAAGAAATGTGCTCATATTGAATATTCAAGGTTAAAAGAAGTGTTGAAGAGTTGCCAGAGATGTAAGCAATTGAACACTTCTTCTGATTCTGACCTCAATGAACACAACTTATGTCGATGTCAATCTTGCTCGTTGTGCGATGAAAAGTTCTTCGCCGAGTTGACGAAGGAAGCATCAGATATAGTAGGATACTTTAATTCAAGAGTTAGGCATATCCTTCATCTTCATACTGCAACAGGAATGAAGAGTTACGTATGGCGCTTGCGCCAGTGCTTTAAAAACGATAGGCAAACACTCGAGAAAGAAGGGAAAAATTTAATCGAGTACATTGCAATGAACGCTATAGCGATGAGGAAAATACTCAAGAAATATGATAAGGTACGCAACCCTGTGAATGGAGAGAACTTCAAATCCAGGATGCTTGCGGAACACATCGAACTTTTACACTCACCTTGGCTGATTGAATTGGGTGCTTTTTATTTGAACTTTAGTGGGCGAGATGGTTGCGAGCTTGATGTATTCTGTGGTAACTTTTCATGTGATCTAAACATAACCGAAGCTGTAATGACTATGAGACTTCCAGATTCGATTAAGCTCGAGTACAATCTAACTTGTGCAATTTGCCTGGATTTTGTTTTCAATCCGTATGCTTTGGGTTGTGGTCATATCTTCTGCAAATCATGTGCTTGCTCAGCAGCTTCTGTGATGATTTTCCAAGGCCTTAAAGCTGCAAGACCAGAGTCAAAGTGTCCCATATGCAGAGAGGTTGGTGTTTATTCTAAGCCAATGCATATGTTAGAACTTGATCTGCTTATAAAAAAAAGGTGCAAAAATTACTGGAAAGAAAGGCTATACGAAGAACGATGCGATACGTTGCACCAAAGCAAGATCTATTGGAATGTGCACTCCACATATTCTGGACTAATGTAG 990 0.396 MKFECVFKEYLQEEKEGMLDKKCAHIEYSRLKEVLKSCQRCKQLNTSSDSDLNEHNLCRCQSCSLCDEKFFAELTKEASDIVGYFNSRVRHILHLHTATGMKSYVWRLRQCFKNDRQTLEKEGKNLIEYIAMNAIAMRKILKKYDKVRNPVNGENFKSRMLAEHIELLHSPWLIELGAFYLNFSGRDGCELDVFCGNFSCDLNITEAVMTMRLPDSIKLEYNLTCAICLDFVFNPYALGCGHIFCKSCACSAASVMIFQGLKAARPESKCPICREVGVYSKPMHMLELDLLIKKRCKNYWKERLYEERCDTLHQSKIYWNVHSTYSGLM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1056 329 SUPERFAMILY RING/U-box 217 276 - -
Lan5g1056 329 ProSiteProfiles Zinc finger RING-type profile. 225 274 IPR001841 -
Lan5g1056 329 SMART ring_2 225 273 IPR001841 -
Lan5g1056 329 Pfam RING-type zinc-finger 225 249 IPR027370 -
Lan5g1056 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 324 - -
Lan5g1056 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Lan5g1056 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 324 IPR013083 -
Lan5g1056 329 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Lan5g1056 329 ProSiteProfiles SPX domain profile. 1 158 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1056 Lan-Chr5 23886177 23888846 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1056 K16275 - gmx:100781704 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1056 5 23886177 23888846 Lan5g1056 5 23886177 23888846 ECH
Lan5g1056 5 23886177 23888846 Lan19g0330 19 3992129 3996479 LSH