Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0229 ATGGCTACTCCACAAGAAGCCATTGAAACTGCTCTTACTCCAACTTCTCCCTCCACTTCTCCTCAATCCCTTCCTCTCCATCACCGAGTCGCAATCGTCACCGGCTCCTCCCGCGGCATCGGCCGACAAATCGCCCTCCACCTCACTCAACTCGGCGCCCGACTCGTTATTAACTACTCCTCCGATAACTCCGCTCCAGCCGACTCACTCGCCGCAGAGATTAACGCTGCCGCCGCCGCCGCCGCATCCCTACCGCGAGCTATTGTTGTTCGCGCTGACATTTCCGATCCAACTCAGGTGAAGGTACTATTCGACTCTGCTGAGCGGGATTTCAACTCGCCGGTTCACATCCTGGTTAACTCGGCTGGAACGTTAGACAGTAAGTATCCCACAATCGCTGATACCTCCATTGAGAGCTTCGATCGTGTCTTCGCTGTGAACGCCACAGGGGCATTCCTGTGCAGCAGGGAGGCAGCGAATCGCTTGAAGCGCGGTGGTGGGGGCCGGATTATACTGTTCTCATCGTCGCAGGTGGCGGCGCTGAGGCCGGGTTTCGGGGCATACACTGCAGCGAAGGCAGCTGTTGAGGCGATGACAAAGATTTTGGCAAAGGAGCTGAAGGGCACTGGGATCACGGTTAACTGTGTGGCTCCAGGGCCGATCGCAACGGAGTTGTTCTTTGGTGGAAGGACAGAAGAGCAGGTGAAGAAGATAATCGATGAGTCCCCTCTGGGGAGGCTCGGGGAGACAAAGGATGTGGCACCTTTAGTGGGTTTTTTGGCTTCTGATGCTGGTGAATGGGTCAATGGTCAGATTATTCGTATTAATGGTGGTTACGTGTAG 843 0.554 MATPQEAIETALTPTSPSTSPQSLPLHHRVAIVTGSSRGIGRQIALHLTQLGARLVINYSSDNSAPADSLAAEINAAAAAAASLPRAIVVRADISDPTQVKVLFDSAERDFNSPVHILVNSAGTLDSKYPTIADTSIESFDRVFAVNATGAFLCSREAANRLKRGGGGRIILFSSSQVAALRPGFGAYTAAKAAVEAMTKILAKELKGTGITVNCVAPGPIATELFFGGRTEEQVKKIIDESPLGRLGETKDVAPLVGFLASDAGEWVNGQIIRINGGYV* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0229 280 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 17 280 - -
Lan5g0229 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Lan5g0229 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lan5g0229 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 207 IPR002347 -
Lan5g0229 280 Pfam Enoyl-(Acyl carrier protein) reductase 35 279 - -
Lan5g0229 280 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 29 219 - -
Lan5g0229 280 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 175 203 IPR020904 GO:0016491
Lan5g0229 280 MobiDBLite consensus disorder prediction 1 24 - -
Lan5g0229 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 279 IPR036291 -
Lan5g0229 280 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 17 280 - -
Lan5g0229 280 Gene3D - 3 279 - -
Lan5g0229 280 PRINTS Glucose/ribitol dehydrogenase family signature 30 47 IPR002347 -
Lan5g0229 280 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Lan5g0229 280 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lan5g0229 280 PRINTS Glucose/ribitol dehydrogenase family signature 188 207 IPR002347 -
Lan5g0229 280 PRINTS Glucose/ribitol dehydrogenase family signature 209 226 IPR002347 -
Lan5g0229 280 PRINTS Glucose/ribitol dehydrogenase family signature 243 263 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0229 Lan-Chr5 2830872 2835878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0229 13 278 Acyl Lipid Metabolism Gene Families AT1G24360 33.955 1.15e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0229 K00059 - gmx:100809416 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0691 10 7086057 7089906 Lan5g0229 5 2830872 2835878 LSH