Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0987 ATGGCATCTTCACCTTCCATGTCAGTTTCCTTAGAATGCGTGAATATATGCAAGTTATGGAGAGGGGATGGAAGCGGTAGATATGACTGTAGTCTTCTTCCGTGTGCCTGGAAAGCTCCTAGAGTCCTTACTGGATTCCTTGCTAGCACAGCTTATCCTGATCAATGTTCCTCATTGTTGAGTGGGCGAAATGGACGAAGGAACCGGTATAATTTTGGTTGTGAAGCCTTTAGTAGAATAGGTTCATATCCCGATGAAGGGCTTGATGTCTTACTTTTTGAAGGACTCTCAAGATCTATCTTATCTCAAGTTACTCCTCGAAGATGGCAATTATGTTGTTCGTCGGAGTTCTCCTTGGAAACTGCCAATGAGGTTTCCGCTGAAAGTTTGTGGGAGGATCTTAAACCCGTGATCTCATACCTGGCCCCTAAAGAACTGGAGTTAGTTCATGATGCTCTTATATTGGCATTTGAAGCCCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCATCCAGTTGAGGTTGCACGTATTCTTGGAGAACTCGAACTTGACTGGGAATCAATCGCTGCTGGATTACTTCATGACACAGTCGAGGATACAAATCTCGTTACTTTTGAGAGGATTGAGGAGGAGTTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACTAAGGTGTCAAAGCTGGGAAAGTTGAAGTATAAGAATGATAAAGAGTCTGCTCAAGACGTGAAAGCAGAGGATCTTCGGCAAATGTTTCTGGCCATGACAGAGGAGGTTCGCATTATCATTGTCAAATTAGCTGACAGGTTACATAACATGCGCACTCTATCACATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGACTCTACAGATATTTGCCCCTTTGGCAAAGTTGCTTGGGATGTATCAAATTAAGGCAGAACTAGAAAATCTATCATTCATGTACACAAATGCGGAAGATTATGCTAAGGTGAAGAGAAGAGTTGCAGACCTATATAAAGAACACGAAAAAGACCTTCTGGAGGCTAACAAAATATTGGTGAAAAAAATCGAAGATGACCAGTTGTTGGATCTTTTGACTATTAAAACGGAAGTGCGAGCTGTGTGTAAAGAGCCTTACAGTGTCTATAAAGCTGTTCTCAAATCAAAAGGTTCAATCAATGAGATTAACCAAATTGCACAGCTTCGAATTATCATCAAACCAAAGCCGTGCATTGGGGTCGGACCTTTATGCGGTCCACAGCAGATTTGCTATCATGTTATGGGACTGGTCCATGGAATATGGACCCCTCTTCCTAGATCTGTTAAGGATTATATTGCAACCCCTAAACCTAATGGTTACCAGAGTCTTCAGACAACTGTAATTCCGTTTTTGTACGAGAGTATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCGGCTCATTATAGCGGGAAAGAATTTGTCACTGGCTTGGTTGGAAGTGCAATGCCTAATAGTAAGAGCTCAAGAGGGAAGACAGTGTGCCTTAACAATGCCAACATTGCACTCAGAATTGGCTGGCTGAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAATATGAGTTCTAGGGAATTTGTTGATACTATAACAAGAGATCTGTTGGGTAGTCGTGTCTTCGTATTTACGCCGAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTATGCTTACATGATACACACTGAAATCGGTAACAAGATGGTAGCTGCAAAGGTCAACGGTAATCTTGTTTCTCCTTCGCACTTGCTTGCAAATGCAGAAGTAGTGGAGATAATCACGTACAATGCACTTTCCAGCAAATCAGCTTTTCAACGGCATAAGCAGTGGTTGCAGCATGCTAAAACTCGTAGTGCAAGACACAAAATAATGAAGTTTCTGAGGGAGCAGGCTGGACGTTCTGCTGCCGATATCACTACTGAAGCAGTCAATGAATTTGTCACTGATTCTGAAGGGGATAGTGAATCTGAAGAACTGTCAGGTGGTTCCAATGGCTTTAAACCCATGAGAGGGAAAATGTTTGTAAATGGAGTGGAAATATCAAATCCAGATAAAGGCGAGGTTATCCTCGGAAGTAAGAATGGAAGTGTTTGGACCCCCAAGATCAATGGAAAACATAATAAGCATGTACGGCACGAGAGTTTGAAGGGTGAAGGGGATATTTTGCTGCAGAGAAACCATGTGGCCAAAATGATTCAAGTTAACACTCCAAGATATAAGGAAGTCTTGCCCGGTTTAGAAAGTTGGCAAACCCATAAAATTGCCTCTTGGCAACATATAGAAGGGCATTCCATCCAATGGTTGTGTGTAGTATGCATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCAGGTGTATCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGTTATTTCATGTAGAGGGAAATTTGGAAAACTTGGTCAGTGCTTGCTCTAGAGTAGATCTTATACTCGGCGTTTTGGGGTGGTCTACTGGTTGCAGCTGGCCGTGA 2622 0.4298 MASSPSMSVSLECVNICKLWRGDGSGRYDCSLLPCAWKAPRVLTGFLASTAYPDQCSSLLSGRNGRRNRYNFGCEAFSRIGSYPDEGLDVLLFEGLSRSILSQVTPRRWQLCCSSEFSLETANEVSAESLWEDLKPVISYLAPKELELVHDALILAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNLVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNDKESAQDVKAEDLRQMFLAMTEEVRIIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQIFAPLAKLLGMYQIKAELENLSFMYTNAEDYAKVKRRVADLYKEHEKDLLEANKILVKKIEDDQLLDLLTIKTEVRAVCKEPYSVYKAVLKSKGSINEINQIAQLRIIIKPKPCIGVGPLCGPQQICYHVMGLVHGIWTPLPRSVKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGKEFVTGLVGSAMPNSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPSHLLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAGRSAADITTEAVNEFVTDSEGDSESEELSGGSNGFKPMRGKMFVNGVEISNPDKGEVILGSKNGSVWTPKINGKHNKHVRHESLKGEGDILLQRNHVAKMIQVNTPRYKEVLPGLESWQTHKIASWQHIEGHSIQWLCVVCIDRRGMMAEVTTALATAGVSICSCVAEIDGGRGMAVMLFHVEGNLENLVSACSRVDLILGVLGWSTGCSWP* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0987 873 Pfam HD domain 152 309 - -
Lan4g0987 873 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 1 872 - -
Lan4g0987 873 Pfam Region found in RelA / SpoT proteins 378 495 IPR007685 GO:0015969
Lan4g0987 873 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Lan4g0987 873 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
Lan4g0987 873 CDD TGS_RSH 566 624 IPR033655 -
Lan4g0987 873 Gene3D - 558 633 IPR012675 -
Lan4g0987 873 SUPERFAMILY ACT-like 797 852 IPR045865 -
Lan4g0987 873 SUPERFAMILY Nucleotidyltransferase 328 501 IPR043519 -
Lan4g0987 873 CDD NT_Rel-Spo_like 368 488 IPR007685 GO:0015969
Lan4g0987 873 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Lan4g0987 873 Pfam TGS domain 565 624 IPR004095 -
Lan4g0987 873 SMART hd_13 167 287 IPR003607 -
Lan4g0987 873 CDD HDc 169 300 IPR003607 -
Lan4g0987 873 MobiDBLite consensus disorder prediction 677 697 - -
Lan4g0987 873 SUPERFAMILY HD-domain/PDEase-like 135 324 - -
Lan4g0987 873 Gene3D Hypothetical protein af1432 124 324 - -
Lan4g0987 873 Gene3D - 797 863 - -
Lan4g0987 873 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Lan4g0987 873 SUPERFAMILY TGS-like 552 624 IPR012676 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0987 Lan-Chr4 13650675 13658701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0987 181 504 EF-hand Containing Proteins AT3G17470 28.696 1.85e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0987 K00951 - gmx:100786637 1510.74