Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0947 ATGGCTCCGTCGCGCCGGAACATCAATGGCCGATCACCACTCGTTAATCCACAACGTCAAATCACTTCTTTCTTCACCAAATCTCCTTCTCCTATTCTCTCTAATTCCACCAACAACCGTAACCCTAACCCTAACCCTAACGGTGGCCCCGCCACACCTTCCCAGCCGCACAAGCCCCTCCTTCTCATCGGCGCGTCTCCGCCACCTTCCTCCGATGTCGTTGGCCGAAGGATTAACGTTTATTGGCCTCTTGACAAGGCATGGTACCAAGGCTCTGTTATGTCGTTTGATAAAATTAGTTCCAAGCATTTGGTTCGTTACGATGATGGTGAAGAGGAAGCGTTGGATCTTTCTAAGGAAAAGATCGAGTGGCTTCAACAAAATCAGAATTCCTCGGGTAAGAAGAAACTCAAACGCCTGCGTAAGATGGTGATCGAGGATGATGAGGTCGAAGAGATTCACAAACATGATGATGATGAACTTGTTGTTGGTGACGGTGATGATTCGAGTGATGAAGATTGGGGAAATAATGTTGTGGTTGAGGATGATGATGAAGGAGAATGTGAAGAAGATATGGAGTTAGAAGTGGAGGATGATGAAGAAGATGTGGCTAAGAGTTCTACGCGAAAGCTAAGTGCGAAGGATGAGGCGCGAAAGCGGAAGGTAGGTGGAATGGAAAAATCGGAGTCTTCGAAGAAGAGCAAGAGTGCAGGGGAAGTTCAAGTCAGTAACAAGGGAGGTTTTAAGCTCTCGGTATTGGAGCGTAACAATGTTACTAATTTGGAGACTAAAAAGATATCAAATGTCACGGACAATGTTGCTGCTGATGATACCTCTGAAAGATTTTTGGCCCGTGAAGCTCACAAATTGCGCTTCCTGAGAGAAGATCGCAGGGATGCCAAGCGAAGGGACCCAGGAGATGAAAATTATGATTCAAGAACTCTCTACTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGTCAGAAACAATGGTGGGATTTCAAGTCAAAGCATATGGATAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAGCTTGACTTGCAGTATATGAAGGGAGAACAACCTCATTGTGGATTTCCGGAGAAGAATTTCTCTATGAATGTGGAAAAACTGGCTAGGAAGGGTTATCGAGTTCTTGTTGTTGAGCAGACTGAAACGCCTGAACAGCTGGAGCTTCGCCGGAAGGAGAAGGGCTCCAAAGACAAGGTTGTGAGACGTGAAATATGTGCAGTAGTTACAAAAGGCACATTAACTGATGGGGAGTTGCTGTCTGCAAACCCAGAAGCTGCATATATAATGGCACTGACCGAGCACTGTGAAAACCATTCAAATGAAATTTCAGAGCATATTTATGGTGTTTGTATAGTTGATGTTGCCACAAGCAGAGTCATTCTTGGACAGCTTAAGGATGATATTGAGTGCAGTGCCTTGTGCTGTATCTTGTCCGAGATCAGGCCAGTTGAAATTGTCAAACCTGCTAAGCTGCTCAGTGCTGAAACAGAGAGAGTACTGCTGAAGCATACCAGAAATCCTATAGTGAATGAATTAGTTCCAATTGTGGAGTTCTGGGATACTGACAAAACTGTGGATCAATTGAAGAAAAATTACAGGCGCGCTAACAATGTTAGTGCTGAAAATGATTGGTTAGATTGCCTGCCAGATGTTTTGCAGGAGCTGGTGAAAGCAGGAAATGACAGCAGAAGTGCACTTTCAGCACTTGGCGGTGCTCTCTATTATCTGAAACAGGCTTTCCTAGATGAGACATTACTTAGATTTGCACAGTTTGAGTTACTTCCATGTACTGGTTTCTGTGATCTTGCTACAAAACCATATATGATTCTTGATGCAGCAGCAATGGAGAATCTTGAGGTTTTTGAAAATAGCCGAGATGGAGGTTATTCAGGGACGCTCTATGCCCAATTAAATCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGGCATGGCTTGCAAGACCATTATGTCATGTCGAGTCAATTAAGGAACGCCAAGAAGCTGTAGCAGGTTTAAAGGGAGTAAATCTACCTTACACACTAGAATTTCGAAAGGCATTATCAAAGCTACCTGACATGGAGCGGTTGCTTGCACGCATCTTCTCTACTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGGTTCTCTACGAGGATGCATCAAAGAAAAAACTGCAAGAATTTATTTCAGCTCTGCGTGGTTGTGAGCTCATGGCACAAGCATGTTCTTCACTAGGTGTTGTTTTGAATTATGTCGAATCTAGACAACTTCATCATCTATTAACACCTGGTAAAGGTCTTCCTGATGTCTGCATTGATTTAAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAATTCAGGGCGTATAATACCTCATAAAGGAGCTGACATAGAATATGACTCAGCCTGTAATGCAGTCAAAGAGATAGAGTCCAGCTTGTTAAAGCATCTCAAGGAGCAAAGAAAAATACTTGGAGACACATCAATCACTTATGTCACTGTTGGTAAGGATGCATATCTGTTGGAAGTACCAGAAAATTCGCGAGGGAATATTCCTCAGAATTATGAGCTACGTTCATCCAAAAAAGGCTTCTTTAGGTATTGGACTCCAGATATTAAAAAGTTCTTAAGAGAGCTCTCCCAAGCTGAATCTGAAAAGGAATCATTGTTGAGAAGTACATTGCAGAGGTTAATCGGCCGTTTTTGTGAACATCACACTAAGTGGAGGCAGTTGGTGTCTGCAACTGCAGAGCTGGATGTTTTGATAAGTTTAGCTATTGCTTGTGACTACTATGAAGGACCAACATGCAGACCAAGTTTCTTAGGCACATTATCTGCAAAAGAAGCTCCATATCTCTCTGCTAAAAGTTTGGGACACCCAGTCCTCAGGCGTGATTCTTTAGGCAATGGTGATTTTGTACACAATGACATAAACATTGGTGGTCCAGATCATGCAAGCTTTATTCTTCTAACTGGTCCTAACATGGGTGGAAAGTCAACTCTTCTTCGCCAAGTTTGCTTGGCTGTGATTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAAAGGTTCAATTTGTCTCCTGTGGACCGGATATTTGTTCGAATGGGTGCCAAAGATAATATCATGGCTGGCCAAAGTACCTTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCAGCCACTCGCAATTCATTGGTGGCACTGGATGAACTTGGGCGTGGGACATCAACTTCTGATGGACAAGCCATTGCAGGATCAGTACTAGAGCACCTTGTGCGGAACGTGCAGTGTCGTGGATTGTTTTCTACCCACTATCATAGATTAGCTATAGATCATGAGAAAGATCCCAAGGTCTCTCTCTGCCATATGGCATGCCAAGTCGGTGGTGGAAATGCAGGTGTGGAAGAAGTCGCCTTTCTTTACAGGCTGACGCCTGGTGCATGCCCCAAGAGCTATGGTGTTAATGTTGCCCGTTTAGCTGGACTTCCAACTTCTGTGCTTGAGACAGCTGCTGCCAAGTCCAGAGAATTTGAGGCTAGTTATGGCAAATGTAGAAAGATGTCTTCTGAAGCAAACACTTCCAATCAAAATTGGGTTGATGAGATGACACTTTTCATGCAAAAACTGAACAATGTCACTACAAATTTGAGTTGTGAAGAGACCATTTGTGATACCTTAATTGAGCTTCAGGATAAAGCAAGAGAGCTCCTACAGCAACTTTAA 3816 0.4321 MAPSRRNINGRSPLVNPQRQITSFFTKSPSPILSNSTNNRNPNPNPNGGPATPSQPHKPLLLIGASPPPSSDVVGRRINVYWPLDKAWYQGSVMSFDKISSKHLVRYDDGEEEALDLSKEKIEWLQQNQNSSGKKKLKRLRKMVIEDDEVEEIHKHDDDELVVGDGDDSSDEDWGNNVVVEDDDEGECEEDMELEVEDDEEDVAKSSTRKLSAKDEARKRKVGGMEKSESSKKSKSAGEVQVSNKGGFKLSVLERNNVTNLETKKISNVTDNVAADDTSERFLAREAHKLRFLREDRRDAKRRDPGDENYDSRTLYLPPDFLRSLSDGQKQWWDFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYIMALTEHCENHSNEISEHIYGVCIVDVATSRVILGQLKDDIECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRNPIVNELVPIVEFWDTDKTVDQLKKNYRRANNVSAENDWLDCLPDVLQELVKAGNDSRSALSALGGALYYLKQAFLDETLLRFAQFELLPCTGFCDLATKPYMILDAAAMENLEVFENSRDGGYSGTLYAQLNQCVTAFGKRLLKAWLARPLCHVESIKERQEAVAGLKGVNLPYTLEFRKALSKLPDMERLLARIFSTSEASGRNANKVVLYEDASKKKLQEFISALRGCELMAQACSSLGVVLNYVESRQLHHLLTPGKGLPDVCIDLNHFKDAFDWVEANNSGRIIPHKGADIEYDSACNAVKEIESSLLKHLKEQRKILGDTSITYVTVGKDAYLLEVPENSRGNIPQNYELRSSKKGFFRYWTPDIKKFLRELSQAESEKESLLRSTLQRLIGRFCEHHTKWRQLVSATAELDVLISLAIACDYYEGPTCRPSFLGTLSAKEAPYLSAKSLGHPVLRRDSLGNGDFVHNDINIGGPDHASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAERFNLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAGSVLEHLVRNVQCRGLFSTHYHRLAIDHEKDPKVSLCHMACQVGGGNAGVEEVAFLYRLTPGACPKSYGVNVARLAGLPTSVLETAAAKSREFEASYGKCRKMSSEANTSNQNWVDEMTLFMQKLNNVTTNLSCEETICDTLIELQDKARELLQQL* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0947 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1209 IPR027417 -
Lan4g0947 1271 SMART mutATP5 1014 1206 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 Gene3D MutS, connector domain 450 630 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 MobiDBLite consensus disorder prediction 9 45 - -
Lan4g0947 1271 Gene3D - 799 930 - -
Lan4g0947 1271 MobiDBLite consensus disorder prediction 163 201 - -
Lan4g0947 1271 Pfam MutS domain I 329 441 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 Gene3D - 67 123 - -
Lan4g0947 1271 SUPERFAMILY DNA repair protein MutS, domain III 636 959 IPR036187 -
Lan4g0947 1271 SUPERFAMILY Tudor/PWWP/MBT 72 113 - -
Lan4g0947 1271 Gene3D DNA repair protein MutS, domain I 284 445 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 SUPERFAMILY DNA repair protein MutS, domain II 447 648 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 SMART DNAend 653 994 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 Coils Coil 901 921 - -
Lan4g0947 1271 Pfam MutS family domain IV 823 914 IPR007861 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 MobiDBLite consensus disorder prediction 146 242 - -
Lan4g0947 1271 Coils Coil 283 303 - -
Lan4g0947 1271 Pfam MutS domain V 1018 1208 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 MobiDBLite consensus disorder prediction 1 70 - -
Lan4g0947 1271 Pfam MutS domain II 452 604 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 MobiDBLite consensus disorder prediction 146 162 - -
Lan4g0947 1271 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 236 1233 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lan4g0947 1271 MobiDBLite consensus disorder prediction 202 234 - -
Lan4g0947 1271 Pfam MutS domain III 639 954 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 Gene3D - 965 1246 IPR027417 -
Lan4g0947 1271 SUPERFAMILY DNA repair protein MutS, domain I 314 437 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lan4g0947 1271 Gene3D - 633 954 - -
Lan4g0947 1271 PANTHER DNA MISMATCH REPAIR PROTEIN MSH6 236 1233 - -
Lan4g0947 1271 PIRSF Msh6 2 1256 IPR017261 GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0947 Lan-Chr4 11877551 11886781 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0947 K08737 - gmx:100811104 1903.26