Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0939 ATGGCAGGGAATGAAGTCAAAACCAAAAATCCTTCCTCAAAGCAAAAATCTGGCGGTGGTGGTGGTAAGAAGAAGGAGGTGAAGAAGGAAACTGGTTTAGGACTCACGAATAAGAAGGCTGAGAACTTCGGAGAGTGGTATTCTGAGGTTGTGGTTAATTCTGAAATGATTGAGTATTATGATATTTCTGGATGCTATATTCTGAGGCCTTGGGCGATGTCGATATGGGAGATCATGCAAGCATTTTTTGATCCAGAAATTAAGAAATTGAAAATCAAGAACTGTTATTTCCCTTTGTTTGTGTCTCCTGGAGTTTTGGAAAAGGAGAAGGAGCACGTTGAGGGATTTGCTCCAGAGGTTGCTTGGGTGACAAAGTCTGGGCAAACCGATTTAGAAGTTCCCATTGCCATTCGTCCAACTAGTGAAACTGTCATGTATCCCTACTTCTCTAAGTGGATAAGGGGGCATCGTGACTTGCCATTGAAGCTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCGACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAAGAAGGACACACTGCTTTTGCAAAAAAGGAGGAAGCTGATCAAGAGGTTCTTGATATTTTGGAGTTATATAGGCGTATTTATGAAGAGTATTTAGCGATTCCTGTCATAAAGGGTAAGAAAAGTGAACTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTGTACAAGGTGCAACTTCTCATTGCTTAGGCCAAAATTTTTCTAAAATGTTTAATATAGAATTTGAAGATGAGAATCGTGAGAAGGCAAGGGTCTGGCAGAACTCATGGGCCTATAGCACACGAACTATTGGGGTGATGGTGATGGTTCATGGCGATGACAAGGGATTGGTGCTGCCTCCTAAAGTAGCATCTGTCCAAGTCATTGTGATTCCCGTGCCTTACAAAGATGCTGATACTCAAGGAATTTTGGATGCCTGTTCTGCTACTGTTAATACATTAGTTGAAGCAGGTATTCGTGCCGAGTCAGATTTAAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCCCTAAGGATTGAAATTGGGCCAAAGGATTTAGCAAATCAGCAGGTCCGTGCTGTACGACGTGATAATGGAGCAAAGATAGACATTAAAAGTGCTGATTCGGTTGTGGAAATAAAAAAGTTGCTCGATCATATTCAACAAAACCTTTTTGAAGTTGCAAAACAAAAACGTGATGAATGCATTCAGGTCATACATACATGGGATGAGTTTGTTCAAGCTTTGAGCCAAAGAAAAATGATCTTAGCTCCTTGGTGTGATGAGGAGGAGGTGGAGGTAGATGTGAAAGCAAGGACAAAGGGTGAGACCGGAGCAGCTAAGACTCTTTGTAGCCCCTTTGAACAGCCCGAACTCCCAGAAGGTACCAAGTGCTTTGCATCAGGAAAGCCTGCAAAGAAGTGGTCATACTGGGGCAGAAGTTACTAG 1551 0.4249 MAGNEVKTKNPSSKQKSGGGGGKKKEVKKETGLGLTNKKAENFGEWYSEVVVNSEMIEYYDISGCYILRPWAMSIWEIMQAFFDPEIKKLKIKNCYFPLFVSPGVLEKEKEHVEGFAPEVAWVTKSGQTDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAKKEEADQEVLDILELYRRIYEEYLAIPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFSKMFNIEFEDENREKARVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGILDACSATVNTLVEAGIRAESDLRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANQQVRAVRRDNGAKIDIKSADSVVEIKKLLDHIQQNLFEVAKQKRDECIQVIHTWDEFVQALSQRKMILAPWCDEEEVEVDVKARTKGETGAAKTLCSPFEQPELPEGTKCFASGKPAKKWSYWGRSY* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0939 516 SUPERFAMILY Class II aaRS and biotin synthetases 41 307 IPR045864 -
Lan4g0939 516 MobiDBLite consensus disorder prediction 1 30 - -
Lan4g0939 516 Gene3D Bira Bifunctional Protein; Domain 2 36 313 IPR045864 -
Lan4g0939 516 CDD ProRS_core_arch_euk 42 303 IPR033721 -
Lan4g0939 516 Gene3D - 314 434 IPR036621 -
Lan4g0939 516 Pfam Prolyl-tRNA synthetase, C-terminal 443 516 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 PRINTS Prolyl-tRNA synthetase signature 94 112 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 PRINTS Prolyl-tRNA synthetase signature 135 146 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 PRINTS Prolyl-tRNA synthetase signature 165 173 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 PRINTS Prolyl-tRNA synthetase signature 175 186 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 75 313 IPR006195 -
Lan4g0939 516 SUPERFAMILY Class II aaRS ABD-related 308 435 - -
Lan4g0939 516 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 135 301 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan4g0939 516 SUPERFAMILY C-terminal domain of ProRS 439 516 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 Hamap Proline--tRNA ligase [proS]. 36 516 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 SMART ProRS_C_1_2 443 516 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 Pfam Anticodon binding domain 320 416 IPR004154 -
Lan4g0939 516 TIGRFAM proS_fam_I: proline--tRNA ligase 37 516 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 Gene3D - 437 516 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 MobiDBLite consensus disorder prediction 1 17 - -
Lan4g0939 516 PANTHER PROLYL-TRNA SYNTHETASE 8 516 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Lan4g0939 516 CDD ProRS_anticodon_zinc 309 516 - -
Lan4g0939 516 PANTHER BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE 8 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0939 Lan-Chr4 11788191 11792918 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0939 K01881 - gmx:100782067 948.732