Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0804 ATGAACCAAGAAATGAATGGTGTTGAGGTAGAGAGGGTGCATGAGAATATTGTGCATGATAGGATAGATTATGTGTTTAAGGTAGTGGTTTTAGGGGACTCTGCAGTGGGAAAAACCCAAATACTATCAAGGTTTGTAAAGAATGAGTTCTACTTTGACTCAAAGTCGACAATTGGAGTTGAGTTCCAAACTAAGACCGTCACGATTAATGACAAAGTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTAACAAGTGCATACTATAGAGGTGCATTAGGTGCAATGCTTGTATATGACATAACAAAACGACAATCGTTTGATCATGTAGCAAGGTGGGTTGAGGAACTAAGAACACATGCAGATAGTTCCATTGTGATAATGTTAATTGGTAACAAAGGTGATCTTGTTGATAAGAGAATTGTAACTACTGAAGATGCATTAGAATTTGCACAAGATCAAAATCTCTTCTTTTCTGAAACTTCAGCTCTTAGTGGTGAAAATGTTGAGAGTGCTTTTATCACATTGTTACAAGAGATTAATAGGGTTGTGTCTAAGAAATCATTGGAATCTTATGGTTATAGAAAACCTAATGGTGATGCTACTCTTAAAGGGTCAAAAATAGATATCATTTCAGGTCCTGAATTGGAGATTAGTCAAATGAAGAAATTATCCTCATGCTCATGTTAA 708 0.3672 MNQEMNGVEVERVHENIVHDRIDYVFKVVVLGDSAVGKTQILSRFVKNEFYFDSKSTIGVEFQTKTVTINDKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRTHADSSIVIMLIGNKGDLVDKRIVTTEDALEFAQDQNLFFSETSALSGENVESAFITLLQEINRVVSKKSLESYGYRKPNGDATLKGSKIDIISGPELEISQMKKLSSCSC* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0804 235 ProSiteProfiles small GTPase Rho family profile. 19 190 - -
Lan4g0804 235 TIGRFAM small_GTP: small GTP-binding protein domain 25 180 IPR005225 GO:0005525
Lan4g0804 235 PRINTS Transforming protein P21 ras signature 26 47 - -
Lan4g0804 235 PRINTS Transforming protein P21 ras signature 49 65 - -
Lan4g0804 235 PRINTS Transforming protein P21 ras signature 67 89 - -
Lan4g0804 235 PRINTS Transforming protein P21 ras signature 129 142 - -
Lan4g0804 235 PRINTS Transforming protein P21 ras signature 164 186 - -
Lan4g0804 235 Gene3D - 18 213 IPR027417 -
Lan4g0804 235 CDD Rab11_like 23 186 - -
Lan4g0804 235 SMART arf_sub_2 6 190 - -
Lan4g0804 235 ProSiteProfiles small GTPase Ras family profile. 20 235 IPR001806 GO:0003924|GO:0005525
Lan4g0804 235 SMART rho_sub_3 28 185 IPR001806 GO:0003924|GO:0005525
Lan4g0804 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 194 IPR027417 -
Lan4g0804 235 SMART rab_sub_5 26 189 - -
Lan4g0804 235 Pfam Ras family 27 187 IPR001806 GO:0003924|GO:0005525
Lan4g0804 235 ProSiteProfiles small GTPase Rab1 family profile. 21 225 - -
Lan4g0804 235 SMART ras_sub_4 23 189 - -
Lan4g0804 235 PANTHER RAS-RELATED PROTEIN RABA3 1 235 - -
Lan4g0804 235 SMART ran_sub_2 31 230 - -
Lan4g0804 235 PANTHER - 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0804 Lan-Chr4 10087760 10089809 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0804 K07904 - gmx:100787725 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0804 4 10087760 10089809 Lan9g0995 9 16802092 16803872 PCT
Lan9g0995 9 16802092 16803872 Lan4g0804 4 10087760 10089809 PCT