Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0201 ATGGCTATGCATTTTCTTCTGCTGCTTTTTACAATGTCTGTTGTTGTTGTTGCATCTGATGAAGAACCTTTTATTGGAGTGAATGTTGGAACATTTCTCTCAGATATGCCTCATCCTACTCAAGTAGTGGCACTACTTAAAGCTCAGAAAATTCAACATGTTCGGTTGTATGACGCTGACCAAGCTATGCTCATTGCACTTGCAAAGACAGGAATTCAAGTTTCTGTCTCTATCCCTAATGAAGAGCTCCTAGCAATTGGTCAATCAAATTCCACCGCAGCTAACTGGGTTTCACGCAACGTGGTAGCGCATTATCCAGCCACCAATATCATATCTATTTGTGTTGGTTCTGAGGTCTTAACTTCAATGCCTAATGCAGCAAAAGTGCTTGTCAACGCGCTTAAGTACATTCATTCAGCCCTCGTGGCTGCCAATCTTGATCGTAAAATCAAAGTTTCGACGCCCCTTTCATCTTCCATTATCCTTGATTCATTTCCACCTTCCCAAGCTTTCTTTAACCGCTCGCTGAATCCAGTCCTGATCCCTATTCTTGATTTCTTGCAATCCACGGACTCTTATTTCATGCTCAATATATACCCTTACTATGACTATGTGCAGTCAAATGGTGCAATTTCATTGGAATATGCACTCTTCAAACCTCTCCCTCCAAACAAAGAAGCTGTTGATTCTAATACACTTCTTCATTACTCCAATGTGTTTGATGCTGTGGTTGATGCAGCATACTTTGCCATGTCTTTTATAAATTACACTAACATTCCGATAGTAGTGACAGAAACAGGATGGCCCTCAAAAGGTGACTCTAATGAGCCTGATGCCACATTAGACAATGCCAATACTTACAACAGCAATTTGATCAAACATGTGCTTAACACAACTGGAACTCCAAAATATCCCGGAATCGCAACTAGTACTTACATCTACGAGCTTTACAACGAGGATATGAAGCAAGGGCCATTGTCAGAGAAGAATTGGGGATTGTTTGATGAAAATGGTGTACCTATTTACATTTTACACTTGACAGGATCAGGTGCAGTGTTAGCAAATGATACCACCAATCAAACATACTGCATTGCAAAGGATGGTGCAGATCCGAAGATGCTGCAGGCCGGAATAGATTGGGCATGTGGAGCTGGCAAGGTGGATTGCTCTCCGATGCTGCAGGGACAACCATGCTATGAACCAGACAATGTGATTGCACATGCAAATTATGCTTTTGACACTTATTATCATCAGATGGGAAAGTCTCCTGAGTCATGTGACTTCAATGAAATGGCTACAATCTCCACTTCCGATCCAAGTCAGGGCTCATGTGTATTCCCTGGAGGGCTTGGAAATAATGGCACCTTCTCTAACATCACTGGAGCATCACTAAATTCGACTAATTCGTATTCTTCTGCCTGCAATCTCTACATATTTGATTTGAGAGGCCTTGTTATGGTGATAGGATTGCTAATATGGGGAATGGTTTTGCTGTAA 1497 0.4168 MAMHFLLLLFTMSVVVVASDEEPFIGVNVGTFLSDMPHPTQVVALLKAQKIQHVRLYDADQAMLIALAKTGIQVSVSIPNEELLAIGQSNSTAANWVSRNVVAHYPATNIISICVGSEVLTSMPNAAKVLVNALKYIHSALVAANLDRKIKVSTPLSSSIILDSFPPSQAFFNRSLNPVLIPILDFLQSTDSYFMLNIYPYYDYVQSNGAISLEYALFKPLPPNKEAVDSNTLLHYSNVFDAVVDAAYFAMSFINYTNIPIVVTETGWPSKGDSNEPDATLDNANTYNSNLIKHVLNTTGTPKYPGIATSTYIYELYNEDMKQGPLSEKNWGLFDENGVPIYILHLTGSGAVLANDTTNQTYCIAKDGADPKMLQAGIDWACGAGKVDCSPMLQGQPCYEPDNVIAHANYAFDTYYHQMGKSPESCDFNEMATISTSDPSQGSCVFPGGLGNNGTFSNITGASLNSTNSYSSACNLYIFDLRGLVMVIGLLIWGMVLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0201 498 Gene3D Glycosidases 24 350 - -
Lan4g0201 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 7 478 - -
Lan4g0201 498 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Lan4g0201 498 Pfam X8 domain 362 433 IPR012946 -
Lan4g0201 498 Gene3D - 355 446 - -
Lan4g0201 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 478 IPR044965 GO:0004553|GO:0005975
Lan4g0201 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Lan4g0201 498 Pfam Glycosyl hydrolases family 17 25 344 IPR000490 GO:0004553|GO:0005975
Lan4g0201 498 SMART X8_cls 361 446 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0201 Lan-Chr4 3330283 3333727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0201 19 492 Glycoside Hydrolase AT1G66250 70.378 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0201 K19891 - gmx:100804152 837.795