Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0194 ATGAGCAGAAAAAGACCATATTCTCCTCCACCACCATCATCATCAACTACCCTTTCCCCTAATTCAACAATTAAGCGCCCAACCTTCACTTCCTACCTCGACATTCCAAACCTCACTCCAAAAATCAACACCCTCTGCGAAATCATCGCCACCACCCCTTCTCTCTCCGTCGAGAAAACCCTCTCTGAAACCGGTTACCGGATCACCCGGGAAGAAGTCGAAGAGGTCCTCAAGCTCTCTTACGGCTTCCCTGGCCAAGCTGTCAAGTTCTTCCGGTGGTCCGGTCACCAACTGAATGATAACCATAGCCCTTATTCTTGGAACCTCGTCGTTGATTTATTGGGTAAGAATCGTTTCTTTGATGCAATGTGGGATGCTATTAAGTCTATGAATAAAGAACGGTTGCTTTCATTGGCCACGTTTGCATCTGTGTTTAGTAGTTATGTTAACGCCGGCCGTGTTCGCGAGGCGATTGTTGCGTTCGAGGTTATGGAGAATTACGGTTGTGTGAGGGATGTTGTTGCTTTGAATTCTTTGTTGAGCGCCATTTGTAGGGATGGTAGGGCTTTTGATGCTTATGAGTATTTGCAAGTTGCGAAGAAGATGATTGTTAGGCCAGATAGTGATACTTACGCGATTTTGATGGAAGGGTGGGAGAGTGAGAAGAATGCTGATAGTGCTAAGGAGACTTTTGCAGAGATGGTGAAAGAGTTAGGTTGGGACCCGGGCAATGTGCCTGCTTATGATTCGTTTTTGTGTACTGTTATTAGGCGAGTTAACGGGTTACATGAAGCAATGAAGTTCTTTGATTCGATGAGAGTTCGGAGGTGTTACCCGGGGATGAGGTTTTTCAAGGTTGCGTTGGACGAGTGTGTTAAGTATCTTGATGTACGGATGGCTGAGTTTTTTTGGGAGGAGATGGTGGGGAAGACGGGGTTGCAACCCAACACGCAAATGTATAATTCCATGATTGCTTTGTATTGCTACCAAAATGATACGGATGAGGCGAAGAAGATGTTGGATGATATGATTTTTAAAGGGGCTTTTCCTGATTTGCTAAGTTATAACTTGTTGTTTCGGTTTTTGATCAAGGGTAGGAAATTGCGTGAGGCTTCGGTGGTGTTCAATGAGATGATAAAGAATGAGTGTGGGCCAGACCAGCCTAACTGTGATGCAGCTGTAAGAGCTTACCTTGATAATGGAGATGCTTTTATGGCGATGAAAGTATGGAAATGTCTCATAGAGAATTACCACAAGGATTTGGAGGATACAGCGAACTTACTTATCGCAGGGCTTCGTGATGCGGACAGGGTACCGGAGGCAGTTAAGTATGCTGAGGATATGATCAGCAGGAGAATCAAGTTGACCTCTTCCACATTGTCTAAGCTGAGACAAAGCCTTGTCAAAGACAGAAAAGAATTTGTGTATGAGGAACTTTTGAGAAAATGGAAATCTCTTTAG 1461 0.4449 MSRKRPYSPPPPSSSTTLSPNSTIKRPTFTSYLDIPNLTPKINTLCEIIATTPSLSVEKTLSETGYRITREEVEEVLKLSYGFPGQAVKFFRWSGHQLNDNHSPYSWNLVVDLLGKNRFFDAMWDAIKSMNKERLLSLATFASVFSSYVNAGRVREAIVAFEVMENYGCVRDVVALNSLLSAICRDGRAFDAYEYLQVAKKMIVRPDSDTYAILMEGWESEKNADSAKETFAEMVKELGWDPGNVPAYDSFLCTVIRRVNGLHEAMKFFDSMRVRRCYPGMRFFKVALDECVKYLDVRMAEFFWEEMVGKTGLQPNTQMYNSMIALYCYQNDTDEAKKMLDDMIFKGAFPDLLSYNLLFRFLIKGRKLREASVVFNEMIKNECGPDQPNCDAAVRAYLDNGDAFMAMKVWKCLIENYHKDLEDTANLLIAGLRDADRVPEAVKYAEDMISRRIKLTSSTLSKLRQSLVKDRKEFVYEELLRKWKSL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0194 486 Pfam Pentacotripeptide-repeat region of PRORP 110 223 IPR033443 -
Lan4g0194 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Lan4g0194 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Lan4g0194 486 MobiDBLite consensus disorder prediction 1 16 - -
Lan4g0194 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Lan4g0194 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Lan4g0194 486 PANTHER - 15 478 - -
Lan4g0194 486 Pfam PPR repeat family 315 361 IPR002885 -
Lan4g0194 486 Gene3D Tetratricopeptide repeat domain 252 427 IPR011990 GO:0005515
Lan4g0194 486 Gene3D Tetratricopeptide repeat domain 80 251 IPR011990 GO:0005515
Lan4g0194 486 MobiDBLite consensus disorder prediction 1 23 - -
Lan4g0194 486 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 15 478 - -
Lan4g0194 486 TIGRFAM PPR: pentatricopeptide repeat domain 319 351 IPR002885 -
Lan4g0194 486 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Lan4g0194 486 TIGRFAM PPR: pentatricopeptide repeat domain 354 386 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0194 Lan-Chr4 3244275 3247403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0194 140 484 Glycosyltransferase AT1G05670 24.929 7.38e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0194 - - aip:107633752 691.804