Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0126 ATGAAGCACAATCATTACACACCTTTCACTCTTCTCACCTTACTCAAACAATGCACCTCCACCAAAACCTTACAACAAGTTCACGCCCAAATGCTTCTAAACTCAATCCACAAACCCAACCACTTACTCTTCAAAACCATTCACTTCAAAAACTTCACTTACTCAAACCTCCTCTTCCGCCACGTCATCCTCCCTAACCACCCCAACGACTACGCTTTCAACATCATGATCCGCGCCTTAACCACCACCTGGCACAATTACCCTCTTGCCCTTCACCTCTACTACCAGATGAGGCTCATTGGCATTACCCCTAACAACTTCACTTACCCATTCCTTTTCCTTGCCTGTGCCAACCTCGTCGAGGTTCGGCACGGCGGTTCGGGGCATTGCGGGGTGGTGAAACTTGGGTTGGGGGTTGATTATCATGTTAGTCATTCTTTGATTACCATGTATGCTAGGTGTGGTGAGTTGTGTTGTGCGAGGAAGGTGTTTGATGAAATTCCTGTAAAGGATTTGGTGTCGTGGAACTCGATGATTTCTGGGTATTCGAAGATGGGGTATGCTACGGAGGCTGTGGAGGTGTTTGGGGAGATGAAGGGTGCTGGGTTTGAGCCGGATGAGATGAGTTTGGTTAGTGTACTCGGGGCATGTGGTGAGCTTGGGGATTTGGATTTGGGGAGGTGGGTGGAGGGGTTTGTTGTGGAACATAATATGACGCTTAACTCATATATAGGTTCTGCTTTGATTAGTATGTATTCTAAATGCGGTGATTTGATATCGGCTAGAAGGATTTTTGATGGCATGGCGGAAAGAGATGTTATCACATGGAATGCTGTGATTTCTGGATATGCTCAAAATGGAAAGGCAGATGAAGCAATATCTTTCTTCCATAGCATGAAGGATGACTGTGTTAATCCAAATAAAATTACATTGACTGCAGTTCTGTCTGCATGTGCCTCCATCGGGGCTCTGGATTTGGGGAAACAGCTTGACGAATATGCTTCACAAAGAGGATTCCAACATGATATTTTTGTGGCTACTGCATTGGTTGATATGTATGCTAAGTGTGGGAGTTTGGACAGTGCACAAAGAGTTTTCCAAAACATGCCCCAAAAAAATGAAGCTTCTTGGAATGCAATGATCTCTGCGCTTGCTTCTCACGGAAAAGCTAAGGAAGCCTTGTCCCTATTTCAGCGCATGTCAGATGAGGGTGCTGGTGCTCGTCCGAACGATATAACATTTGTAGGATTACTTTCTGCTTGTGTGCATGCAGGCCTTGTTGCTGAGGGCTATAGATTGTTTGATATGATGAGCACATTGTTTGGGTTGGTACCTAAGATTGAACACTACTCTTGTATGGTTGATCTTTTGGCACGTGCTGGTAATCTATATGAAGCTTGGGATCTCATTGAGAAAATGCCTGAAAAACCAGATAAGGTTACATTGGGTGCTTTACATGGTGCCTGTCGTCGGCAAAAAAATATAGAAATAGGTGAACGAGTTACACAGCTGCTCCTGGAGATAGATCCATCAAATTCCGGGAACTATATTATCTCATCAAAAATATATGCGAACTTGAATATGTGGGACGATTCAGCAAGGATGCGAGCATTGATGAGACAGAAAGGTGTCACTAAAACTCCTGGTTGTAGCTGGATTGAAATTGAGAATCACTTGCATGAATTTCATGCTGGTGATGGCTTACGCATTGGTTCTATTGACATAGATGTTGTAATTGATTTTCTCCATGAGGAGCTGAAAAGGGAAGGATATGTCCCAATGATTGTTGAATAG 1794 0.4387 MKHNHYTPFTLLTLLKQCTSTKTLQQVHAQMLLNSIHKPNHLLFKTIHFKNFTYSNLLFRHVILPNHPNDYAFNIMIRALTTTWHNYPLALHLYYQMRLIGITPNNFTYPFLFLACANLVEVRHGGSGHCGVVKLGLGVDYHVSHSLITMYARCGELCCARKVFDEIPVKDLVSWNSMISGYSKMGYATEAVEVFGEMKGAGFEPDEMSLVSVLGACGELGDLDLGRWVEGFVVEHNMTLNSYIGSALISMYSKCGDLISARRIFDGMAERDVITWNAVISGYAQNGKADEAISFFHSMKDDCVNPNKITLTAVLSACASIGALDLGKQLDEYASQRGFQHDIFVATALVDMYAKCGSLDSAQRVFQNMPQKNEASWNAMISALASHGKAKEALSLFQRMSDEGAGARPNDITFVGLLSACVHAGLVAEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGNLYEAWDLIEKMPEKPDKVTLGALHGACRRQKNIEIGERVTQLLLEIDPSNSGNYIISSKIYANLNMWDDSARMRALMRQKGVTKTPGCSWIEIENHLHEFHAGDGLRIGSIDIDVVIDFLHEELKREGYVPMIVE* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0126 597 Pfam PPR repeat 449 476 IPR002885 -
Lan4g0126 597 Gene3D Tetratricopeptide repeat domain 224 324 IPR011990 GO:0005515
Lan4g0126 597 Gene3D Tetratricopeptide repeat domain 133 223 IPR011990 GO:0005515
Lan4g0126 597 Gene3D Tetratricopeptide repeat domain 1 124 IPR011990 GO:0005515
Lan4g0126 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Lan4g0126 597 SUPERFAMILY TPR-like 238 401 IPR011990 GO:0005515
Lan4g0126 597 PANTHER - 269 595 - -
Lan4g0126 597 PANTHER - 170 268 - -
Lan4g0126 597 PANTHER - 24 168 - -
Lan4g0126 597 TIGRFAM PPR: pentatricopeptide repeat domain 173 207 IPR002885 -
Lan4g0126 597 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Lan4g0126 597 TIGRFAM PPR: pentatricopeptide repeat domain 376 404 IPR002885 -
Lan4g0126 597 TIGRFAM PPR: pentatricopeptide repeat domain 450 475 IPR002885 -
Lan4g0126 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lan4g0126 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 170 268 - -
Lan4g0126 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 269 595 - -
Lan4g0126 597 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 168 - -
Lan4g0126 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 372 IPR002885 -
Lan4g0126 597 Pfam E motif 494 554 IPR046848 -
Lan4g0126 597 Pfam PPR repeat family 372 422 IPR002885 -
Lan4g0126 597 Pfam PPR repeat family 271 319 IPR002885 -
Lan4g0126 597 Pfam PPR repeat family 170 217 IPR002885 -
Lan4g0126 597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Lan4g0126 597 Gene3D Tetratricopeptide repeat domain 405 564 IPR011990 GO:0005515
Lan4g0126 597 Gene3D Tetratricopeptide repeat domain 325 404 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0126 Lan-Chr4 1917154 1920179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0126 90 593 Glycoside Hydrolase AT3G49170 36.346 4.68e-109 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0126 - - gmx:100786038 952.97