Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0124 ATGGCAACTGAGAGTCCAATTAGAATCTCAAAAGCTGGTGGTAAATGGCCCTCTCTTAAGCAAGCTGCAACTTATGGTCCACCATCTCGTAACATGGCAACAGAGGATTTAGGTATACTTTTGAAGGGCCATCGGTTCCACGGCAGTGGAAAGATTGTGGCACCAAATCGCAGCGGCAGTGCACCTCCTAGCATGGAAGGCTCATTTCATGCCATAGAAAACCTGTTATCCCAGCAGAGCACCACCCAGAATGCAAGCCTTGCAACTCTAAACAAAGCTATGCAGAAATGTGAGACTGAAGAACAATTACGAGCTGATCCAGCTTATTTGGCATATTACAGTTCTCATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTAATCTCCCGGGAAAATCGTCATATGGGACATCATATTAGTAATTTTAGCAATAATTGGGGATCATCTTTTGCAGATGATAGCAGTAGAAGTTCTAAACGTTTGTCCCAATGGACTCTTGCAACACACAAGGAGGAGTCCGAGGATGAATCACCCCAACAGCCATATGATAATGAGTTAGTTAAGACAAGTGACATATGGCGTAGACCGGATGCAGCTTCATCGGCATCTCAGCACAAAAATGTGGTTGATTTAATTCAGGAAGATTTCCCCCGTACAGTGTCCCCTGTATATAATAACTCTCTTTCCATACGTCATGGACTCGTGGATGAACCAATTGACTTAGATGCTGGTTCCACTTCTTCTCATGACCCTTCTGTCACTACAGCAGATGCTGCTAAACCTGCTGGAGGTGCAGATGAAAGAAGTGTTTTATCAACTGTTGATTCCCATGCCCCTGTTGCAAGCTCATCATCTATTGAATCCACAGGCAGCGTGGGTTTTAGTGACATAGATTTTATGACTGTTGAGTCTCAGTTAAAGGCTCTTAGTGTATCTAATGTACCAAATTTACAAAGCCTGAGTAATGAAGAAAAATGGAAGGCCAGCTACCAGAATAATTTGATGCAACACCAGAAATACCACCAACAAAACAATAAATATGAAACTCCTAATGCCAATTCTCAAAGTGTAAATTCTGCCTATGTTGGTAGGGAACAGTTTCCTCGTAATTCCAGCAAGTTCTCTGATGTCCAACCAGTGCTGCAGTCATCTGGGATTACACCTCCACTATATGCCACAGCGGCTTATATGACCTCAGTAAATCCATACTATACTAATTTGCATGCCTCAGGCATGTATACTCCACAATATGTTGGTGGATACACCTTAAATCCCACAGCTATTCCTTCATATATTACTGCATTTCCGCCTCACGGTGCTGTACCACTTGTTGTTGATGGGGCTGCTAGTTCTAGTTATACTCCACTACCACCAGGGGTTTCAACCAGGGGAAGCATTTCATATAGACCAAGTGGTCTTATGCAGCCTTCTTTTGGTGATCCTTTTTACATGCAATATCATCAGCAACCTTTTGTGGAGGGGTATGGTATTCCTGGTCATTTTGATCCACTGGCACCTAGACCAAGTGGTGGTAGCCAAATTAGTCCCTTTGATTTGCAGAAAAGTCCCAGTACCGGTGCTTATTCGGATGATAAAATATTGCATGATCAGGGAACCAGTGCTAATATGAAGTCAAGAAGAGGAGGATTAACAATTCCTAGTTATCACGGACACCCGCCAAACATGGGTTTTGTAATGCAGTATCCAAGTTCACCACTTCCTAGTCCACTTCTGTCAGGATACCCAGAAGGAAGTCCTGCCCTTCAAGGAGGAAGGAGTGAAGTGAAACCTTCCCCAGCTTCCGGTAGAAATATAGGTGTATTAATTGGATGGCAAGGCCAGAGATACTTTGACAGTACTCATGACCCCAAAATTGTTAATTTTCTTGAGGAATTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGCGCTGATCAGCACGGTAGTCGATTTATACAGCAAAAGTTGGAATGTTGTGGTGTTGAAGAGAAGGCATTGGTGTTCAAAGAAGTTCTCCCACATAGTTCAAAATTAATGACTGATGTATTTGGTAATTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAGGGAACTTGCAAATCAGTTGGCTGGTCAGATACTTACTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGATTGTTCGTGAGCTAGATGGAAATGTAATGAAATGCGTTCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACCAAACAAATTGGCTTCATAATATCTGCATTTCGTGGCCAAGTTGCTAATTTATCAATACATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTACAGATGAGGTTGAATGTCAGTTTATTGTGGATGAGATATTGGAGTCAGTTTGTTCTCTTGCTCAGAACCAATATGGTAATTATGTTACCCAGCATGTATTGGAGAGAGGAAATCGTCAGGAACGAAGTCAAATTATTAGTAAGCTGTCAGAACATGTTGTTCAATTAAGTCAGCATAAATTTGCTTCAAATGTTATCGAGAAATGTTTGGAGTATGGTGATGCCAATGAAAGGGAGCTGTTAATTTCAGAGATTGTTGGGCAAGGCGAACAGAATGATAATTTATTGACAATGATGAAAGACCAGTTTGCAAATTATGTGGTCCAGAAGGTTATTGATATGTGTTCCGAAAACCAGCGAGCGAAGTTGCTTTCGTACATAAGAATTCATGCTCATGTTTTGAAGAAATACACTTATGGAAAACACATTGTGTCTCGGTTGGAACAGCAATTTGGAGAAGAAAATCAAACACTTGGAACCTGA 2922 0.4151 MATESPIRISKAGGKWPSLKQAATYGPPSRNMATEDLGILLKGHRFHGSGKIVAPNRSGSAPPSMEGSFHAIENLLSQQSTTQNASLATLNKAMQKCETEEQLRADPAYLAYYSSHVNLNPRLPPPLISRENRHMGHHISNFSNNWGSSFADDSSRSSKRLSQWTLATHKEESEDESPQQPYDNELVKTSDIWRRPDAASSASQHKNVVDLIQEDFPRTVSPVYNNSLSIRHGLVDEPIDLDAGSTSSHDPSVTTADAAKPAGGADERSVLSTVDSHAPVASSSSIESTGSVGFSDIDFMTVESQLKALSVSNVPNLQSLSNEEKWKASYQNNLMQHQKYHQQNNKYETPNANSQSVNSAYVGREQFPRNSSKFSDVQPVLQSSGITPPLYATAAYMTSVNPYYTNLHASGMYTPQYVGGYTLNPTAIPSYITAFPPHGAVPLVVDGAASSSYTPLPPGVSTRGSISYRPSGLMQPSFGDPFYMQYHQQPFVEGYGIPGHFDPLAPRPSGGSQISPFDLQKSPSTGAYSDDKILHDQGTSANMKSRRGGLTIPSYHGHPPNMGFVMQYPSSPLPSPLLSGYPEGSPALQGGRSEVKPSPASGRNIGVLIGWQGQRYFDSTHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLECCGVEEKALVFKEVLPHSSKLMTDVFGNYVIQKFFEYGSPEQRRELANQLAGQILTLSLQMYGCRVIQKALEVIELEQKAQIVRELDGNVMKCVRDQNGNHVIQKCIESIPTKQIGFIISAFRGQVANLSIHPYGCRVIQRVLEHCTDEVECQFIVDEILESVCSLAQNQYGNYVTQHVLERGNRQERSQIISKLSEHVVQLSQHKFASNVIEKCLEYGDANERELLISEIVGQGEQNDNLLTMMKDQFANYVVQKVIDMCSENQRAKLLSYIRIHAHVLKKYTYGKHIVSRLEQQFGEENQTLGT* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0124 973 MobiDBLite consensus disorder prediction 241 289 - -
Lan4g0124 973 MobiDBLite consensus disorder prediction 497 532 - -
Lan4g0124 973 PANTHER PUMILIO HOMOLOG 5 45 966 - -
Lan4g0124 973 MobiDBLite consensus disorder prediction 275 289 - -
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 680 715 IPR001313 GO:0003723
Lan4g0124 973 SUPERFAMILY ARM repeat 629 961 IPR016024 -
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 897 938 IPR001313 GO:0003723
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 861 896 IPR001313 GO:0003723
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 752 787 IPR001313 GO:0003723
Lan4g0124 973 Gene3D - 625 971 IPR011989 -
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 825 860 IPR001313 GO:0003723
Lan4g0124 973 MobiDBLite consensus disorder prediction 513 527 - -
Lan4g0124 973 CDD Pumilio 639 960 IPR033712 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 720 753 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 687 717 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 830 862 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 648 682 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 763 787 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 865 898 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 907 938 IPR001313 GO:0003723
Lan4g0124 973 Pfam Pumilio-family RNA binding repeat 792 827 IPR001313 GO:0003723
Lan4g0124 973 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 624 964 IPR033133 GO:0003723
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 788 824 IPR001313 GO:0003723
Lan4g0124 973 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 966 - -
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 716 751 IPR001313 GO:0003723
Lan4g0124 973 ProSiteProfiles Pumilio RNA-binding repeat profile. 644 679 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 644 679 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 752 787 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 825 860 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 680 715 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 861 896 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 903 938 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 716 751 IPR001313 GO:0003723
Lan4g0124 973 SMART pum_5 788 824 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0124 Lan-Chr4 1869463 1878343 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0124 K17943 - gmx:100780168 1512.66