Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0118 ATGGCAACTCCACCAGACCCGTCGGCTACCTCCACCGCCACCGCCACCGCCACCACCGGAGAAACCCTTAGCAAAAATGCATTGAAGCGGGAACTCAAGAACAAGCAAAGAGAAGAGGAAAGGAAGCGCAAGGAGGAGGAGAAGGCCAAAAAGGCTGCTGAAGTGCAACAAGCTAAAGATACCAAAAAAACTGCGTCTGCTGCGGATGAGGAAGATATGGACCCAACACAATACCATGAGAATAGGCTTAAGAGTCTTGCAGCTCAGAAAGCAGAAGGGAATAACCCATATCCACACAAGTTCTTTGTCTCTCTGTCTATTGAGGAATACATCAAGAAATATGAAGGGTTAAGTAATGGGGAGCACCTTGAGGATGTTTCTGTCTCCTTGTCTGGCCGAATCATGCACAAACGTGCTTCTGGTGCAAAGCTTGTCTTTTATGACTTGCACGGTGGTGGTTTCAAGGTCCAGGTGATGGCTGATGCAAGTAAATCAGACTTGGATGAAGCTGAGTTTTCTAAATTCCATTCTAATGTGAAGCGCGGTGATATCGTTGGTATCACTGGATTTCCAGGAAAAAGTAAGAAGGGAGAGCTCAGTATTTTTCCAAAGACTTTTGTATTGCTGTCTCATTGTCTGCATATGATGCCAAGACAAAAATCTGCTGCTGCTGCTGATAATGCAAATTTGTTGAAACAGCCGTGGGTTCCAGGAAGTACCAGGAATCCTGAAACATACATTTTGAAGGATCAGGAAACAAGATACCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAAGACTAGGTCTAAAGTCATTTCTTACATTAGGAGATTTCTTGATGATCTTGATTTCTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCAGCAGCTCGCCCATTTGTAACTCATCATAATGATCTTAACATGAGGTTATTCATGCGAATTGCCCCTGAACTCTATCTCAAGGAGCTTGTTGTTGGTGGGATAGATCGCGTTTATGAAATTGGCAAACAATTTAGAAACGAGGGAATAGATTTGACTCACAATCCTGAGTTCACTACCTGTGAGTTCTATATGGCTTATAAGGATTACAATGATTTGATGGAGATAACAGAGCAAATGTTGAGTGGCATGGTTCAGGAACTTACTAAAGGCAGCTACAAAATCAAGTATCATGCAGATGGGATTGATAAGGATCCTATTGAAATTGACTTCACTCCACCTTTCAGGAGGATTGACATGATTGATGAACTGGAGAAGATAGCAGGCCTCAGTATTCCGAAAGACTTGTCGAGTGAAGAAGCTAATCAATATTTGAAGGATGCGTGCTTGAAGTATGAGATCAAATGCCCTCCTCCTGAAACAACTACACGTTTGTTGGATAAACTTGTGGGACACTTTTTGGAGGAAACCTGTGTAAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTGGCAAAATGGCATAGATCAAAACCAGGCCTGACAGAGCGTTTTGAATTGTTTGTTAACAAACATGAACTTTGCAATGCTTATACTGAATTGAATGACCCTGTAGTACAACGACAAAGATTTGCTGATCAACTCAAGGATCGACAATCAGGTGATGATGAGGCAATGGCATTAGATGAAACATTTTGCACGGCTCTGGAGTATGGTTTGCCACCAACTGGTGGTTGGGGTTTGGGCATTGATCGATTGACCATGTTGCTGACTGATTCTCAGAATATTAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA 1815 0.4248 MATPPDPSATSTATATATTGETLSKNALKRELKNKQREEERKRKEEEKAKKAAEVQQAKDTKKTASAADEEDMDPTQYHENRLKSLAAQKAEGNNPYPHKFFVSLSIEEYIKKYEGLSNGEHLEDVSVSLSGRIMHKRASGAKLVFYDLHGGGFKVQVMADASKSDLDEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVLLSHCLHMMPRQKSAAAADNANLLKQPWVPGSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRSKVISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKELVVGGIDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYKDYNDLMEITEQMLSGMVQELTKGSYKIKYHADGIDKDPIEIDFTPPFRRIDMIDELEKIAGLSIPKDLSSEEANQYLKDACLKYEIKCPPPETTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVNKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0118 604 Gene3D - 76 218 IPR012340 -
Lan4g0118 604 TIGRFAM lysS_bact: lysine--tRNA ligase 242 603 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lan4g0118 604 MobiDBLite consensus disorder prediction 1 25 - -
Lan4g0118 604 PANTHER LYSYL-TRNA SYNTHETASE 12 604 - -
Lan4g0118 604 Pfam tRNA synthetases class II (D, K and N) 250 600 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan4g0118 604 Pfam OB-fold nucleic acid binding domain 128 205 IPR004365 GO:0003676
Lan4g0118 604 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 272 602 IPR006195 -
Lan4g0118 604 CDD LysRS_N 127 262 IPR044136 GO:0000166
Lan4g0118 604 MobiDBLite consensus disorder prediction 1 77 - -
Lan4g0118 604 PANTHER LYSINE--TRNA LIGASE 12 604 - -
Lan4g0118 604 Coils Coil 25 61 - -
Lan4g0118 604 CDD LysRS_core 265 602 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan4g0118 604 Hamap Lysine--tRNA ligase [lysS]. 81 603 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lan4g0118 604 PRINTS Lysyl-tRNA synthetase signature 287 297 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan4g0118 604 PRINTS Lysyl-tRNA synthetase signature 303 319 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan4g0118 604 PRINTS Lysyl-tRNA synthetase signature 332 345 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan4g0118 604 PRINTS Lysyl-tRNA synthetase signature 350 367 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan4g0118 604 PRINTS Lysyl-tRNA synthetase signature 485 501 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan4g0118 604 Gene3D Bira Bifunctional Protein; Domain 2 246 604 IPR045864 -
Lan4g0118 604 MobiDBLite consensus disorder prediction 26 77 - -
Lan4g0118 604 SUPERFAMILY Nucleic acid-binding proteins 73 217 IPR012340 -
Lan4g0118 604 SUPERFAMILY Class II aaRS and biotin synthetases 250 601 IPR045864 -
Lan4g0118 604 PIRSF LysRS2 8 604 IPR034762 GO:0004824|GO:0005524|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0118 Lan-Chr4 1794625 1801279 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0118 K04567 - gmx:100785660 1065.06