Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0116 ATGGAGGGTACCCTATTCCCCACTAGGCCACTCTTACCACTCCAACCAAACAGACCCCAACACCAACAACAACCACAACCACAACAACAACAACAACAACAACCTTTGAAATATAAGTCAACCCTTCTTCCACCAACCATTCACTCTCCATCACCACAACCTCATTCAATTCAATTTGATTCCATTCTCCAACACCTTTCTTCATCTCCAATCACCACTAAAAACAACAACAACAAAAATATTGTACAACATAATAGGAAACAACCCACTTCAGCTTCTGTTCCAATAATTGATGAGAAGCATGTTGGTGATGAAAAGATTGGATTTTTATCAGATAGGGGTAAGTTGATACTCAATTCAATTGTTGGGTCACCTTTGAATAGTTTGAATGATTTCTTTAACTCTGCAAAAATTGATTTGCTTCAAGTTGATTTTCCTAGTCTCTTGAAGGCTTTAGGCCTTTCTGGGAACTGGGAGAGAGCCCTTTTGTTGTTTGAATGGGTTTTGTTGAATTCTGGGTCTGAAAATGTGAGGGTGGAGAAGGAGGTTATTGAGATTATGGTTAGGATATTGGGTAAAGAATCACAACATTCAATTGCATCCAAGCTATTTGATTTAATTCCTGTTGAAGAATACTCACTTGATGTAAGGGCATACACTACGATTCTTCATGCACATGCTCGCTCGGGCAAGTATAAACGAGCTATTTATGTCTTCGAGAAGATGAAGGGGACTGGTCTTGATCCTACTTTGGTCACTTATAATGTTATGCTTGATGTTTACGGCAAGATGGGTCGTTCATGGGATAAAATCTTGGAACTATTGGATGAAATGAGAAGTAAAGGGCTTGATTTTGACGAGTTTACATGCAGCACTGTGATCTCTGCTTGTGGGAAAGAGGGTATGCTAGTTGAAGCAAAGAAGTTTTTCGCTGAATTGAAATTGAATGGCTATAAACCCGGAACTGTTACATATAATTCATTGTTGCAAGTTTTCGGAAAGGCTGGAGTTCACACTGAGGCCTTGAGCATTTTAAAAGAGATGGAGGATAATAATTGTCCACCGGATTCTGTTACTTACAATGAGCTTGTGGCGGCATATGTAAGAGCCGGATTTCATGATGAAGGGGCTGCTGTCATAGATACGATGACTAGTAAAGGAGTAATGCCAAATGCTGTTACTTATACCACTGTAATGAATGCCTATGGTAAGGCAGGAAAGGAGGACATGGCGTTGAAGTTGTTCAGCCAGATGAAGGAGGTGGGTTGTGTTCCCAATGTATATACATACAACTCTATTCTTGCAATCCTAGGCAAGAAGTCGAGATCTGAGGATATGATAGAAGTCCTCCGTGACATGAAATTGAATGGATGTGCTCCTAATCGTGTTACCTGGAACACCATGCTTGCTTTATGTGGTGAGGAGGGTAAGCAAAATTATGTTAACCATGTTTTAAGGGAGATGAAAAACTGTGGATTTGAGCCGGACAAAGACACGTTCAATACATTAATTAGTGCATATGGTCGGTGTGGATCTGAAGTTGATGTTGCAAAAATGTACGGGGAAATGGTTAAAGCAGGCTATACTCCATGTGCCACAACCTATAATGCTCTTTTGAATGCTCTTGCTAGGCGTGGCGATTGGAAAGCAGCGGAATCTGTCATTATGGAAATGAGGAACAAGGGTCTTAAGCCTAACGAGACATCATACTCACTGTTGATTCATTGCTATTCCAAGGATCGGAATATCAAGGGGATAGAGAAGGTTGAGAAAGAAATATATGACGGTCATGTCTTTCCTAGTTGGATACTTTTGAAAACCCTTGTCATTGCATACTACAAGTGCAGACACCTTAGGGGAATGGAAAAGGCATTTCAGCACTTGCAAAAGAATGGATACAAACCTGATTTGGTTGTAATAAACTCCATGATTTCTATGTTTGTGCGATTCAAGATGCACACCAAGGCGCGTGAAATGCTGCATTTTATTTATGAAAGTGGTCTGGAGCCGAATCTCGTCACCTATAATAGCTTGATGGACTTGTATGCCCGAGAAGGTGAATGCTGGAAAGCAGAAGAAATGCTGAAGCAAATTCAGAATTCGGGTCAGAAGCCGGATGTTGTATCATATAATACTGTCATCAAGGGATTTTGCAGGCAAGGACTCATGCAGGAGGCTATTAGAGTTCTCTCCGAGATGACCGCTAATGGCGTTCGACCATGCATCATTACATACAATACTTTATTGGGAGGCTATGCAGGACAAGAGTTGTTTAGCGAAATAGATGAAGTCATAAGATATATGATTGAGCACAATATTAGGCCTAATGAGCTGAGTTACAAGATTGTAGTTGATGGTTATTGTAAAGTAGGGAATTATACAGAAGCTATGGACTTTGTCTCTAAGATTAAGGACATTGATATCTCTTTTGATGATCAATTTGTCAAAAGGTTAGTTTCATGCATTAGGGAGAGTTTAGGGTCTTGA 2487 0.4021 MEGTLFPTRPLLPLQPNRPQHQQQPQPQQQQQQQPLKYKSTLLPPTIHSPSPQPHSIQFDSILQHLSSSPITTKNNNNKNIVQHNRKQPTSASVPIIDEKHVGDEKIGFLSDRGKLILNSIVGSPLNSLNDFFNSAKIDLLQVDFPSLLKALGLSGNWERALLLFEWVLLNSGSENVRVEKEVIEIMVRILGKESQHSIASKLFDLIPVEEYSLDVRAYTTILHAHARSGKYKRAIYVFEKMKGTGLDPTLVTYNVMLDVYGKMGRSWDKILELLDEMRSKGLDFDEFTCSTVISACGKEGMLVEAKKFFAELKLNGYKPGTVTYNSLLQVFGKAGVHTEALSILKEMEDNNCPPDSVTYNELVAAYVRAGFHDEGAAVIDTMTSKGVMPNAVTYTTVMNAYGKAGKEDMALKLFSQMKEVGCVPNVYTYNSILAILGKKSRSEDMIEVLRDMKLNGCAPNRVTWNTMLALCGEEGKQNYVNHVLREMKNCGFEPDKDTFNTLISAYGRCGSEVDVAKMYGEMVKAGYTPCATTYNALLNALARRGDWKAAESVIMEMRNKGLKPNETSYSLLIHCYSKDRNIKGIEKVEKEIYDGHVFPSWILLKTLVIAYYKCRHLRGMEKAFQHLQKNGYKPDLVVINSMISMFVRFKMHTKAREMLHFIYESGLEPNLVTYNSLMDLYAREGECWKAEEMLKQIQNSGQKPDVVSYNTVIKGFCRQGLMQEAIRVLSEMTANGVRPCIITYNTLLGGYAGQELFSEIDEVIRYMIEHNIRPNELSYKIVVDGYCKVGNYTEAMDFVSKIKDIDISFDDQFVKRLVSCIRESLGS* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 776 810 IPR002885 -
Lan4g0116 828 Pfam PPR repeat family 530 578 IPR002885 -
Lan4g0116 828 Pfam PPR repeat family 740 789 IPR002885 -
Lan4g0116 828 Pfam PPR repeat family 460 507 IPR002885 -
Lan4g0116 828 Pfam PPR repeat family 320 367 IPR002885 -
Lan4g0116 828 Gene3D Tetratricopeptide repeat domain 266 385 IPR011990 GO:0005515
Lan4g0116 828 Gene3D Tetratricopeptide repeat domain 478 626 IPR011990 GO:0005515
Lan4g0116 828 MobiDBLite consensus disorder prediction 15 35 - -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 706 740 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 285 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Lan4g0116 828 Pfam PPR repeat 702 734 IPR002885 -
Lan4g0116 828 Pfam Pentatricopeptide repeat domain 625 682 IPR002885 -
Lan4g0116 828 Pfam Pentatricopeptide repeat domain 379 439 IPR002885 -
Lan4g0116 828 Pfam Pentatricopeptide repeat domain 214 264 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Lan4g0116 828 MobiDBLite consensus disorder prediction 1 35 - -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 705 IPR002885 -
Lan4g0116 828 Gene3D Tetratricopeptide repeat domain 735 810 IPR011990 GO:0005515
Lan4g0116 828 Gene3D Tetratricopeptide repeat domain 386 456 IPR011990 GO:0005515
Lan4g0116 828 Gene3D Tetratricopeptide repeat domain 627 734 IPR011990 GO:0005515
Lan4g0116 828 Gene3D Tetratricopeptide repeat domain 123 265 IPR011990 GO:0005515
Lan4g0116 828 PANTHER OS03G0856100 PROTEIN 1 824 - -
Lan4g0116 828 PANTHER - 1 824 - -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 636 670 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 638 671 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 673 707 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 252 285 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 534 567 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 743 777 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 218 250 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 779 804 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 463 496 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 708 740 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 393 427 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 358 392 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 499 530 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 428 461 IPR002885 -
Lan4g0116 828 TIGRFAM PPR: pentatricopeptide repeat domain 323 357 IPR002885 -
Lan4g0116 828 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 741 775 IPR002885 -
Lan4g0116 828 MobiDBLite consensus disorder prediction 68 90 - -
Lan4g0116 828 Pfam PPR repeat 288 317 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0116 Lan-Chr4 1750486 1753254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0116 483 811 Glycosyltransferase AT1G05670 23.030 1.90e-30 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0116 K17710 - gmx:100803889 1239.17