Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0098 ATGGCAAAAAGATCTCTATTATGGTCCTTGCTTCTAGGACTATTATCTTGTTTCATAGTTGTTGGCACTTATGGTGAGAACTTGCATCATTCTAGGACCATTTCTAGTGGCAACTATCATGAAGCAATGCATAGATTGAAGGCATTTAAAACCTCTCTAACAAGACATGAGTCCATAGCTTCAACACCATCTTATAGCCCTTCTCCTCTTCCATCTCAAGGTGTGAACAATCCGCATGTGTACCATGTAACAGCTTATGGAGCAGATCCAAGTGGTAATTCAGACAGCACAGAAGCACTTCTTGCAGCCATAGCAGATGCAACAAAGGGTCCTAGTGAAAGATATTTGTTGGAGGGTATCAATGATCTTGGAGGTGCACAAATCAATCTTGAGGGTGGAAATTACATGATTAGCCAACCACTAAAGTTACCAGTGGTTGGGGTAGGGAACCTAATGATACATGGAGGAACCATAAGAGCCTCAAACAATTTTCCAGCAGATAGCTATATCATTGATTTGTCAAAATCTTCTAATAAGACCCCTTCACCATCCTACAATTTTGAGTACATAACTCTCAAGGACCTTTTGTTGGACTCAAACTTTAGGGGAGGAGGAATTTCAGTCATAAACTCACTCAGAATCAACATAGACAATTGTTACATTACACATTTCACCACCAATGGAATTTTAGTCCAAAGTGGTCATGAAACCTACATCAGAAACTCATTCCTTGGCCAGCACATCACGGCCGGCGGGGATAAAAACGAAAGGAACTTCTCTGGCACAGCAATAAACCTTCAGGGCAACGATAACGCTGTCACGGATGTTGTAATTTTCTCGGCTGCTGTCGGAATAATGGTGACCGGTCAGGCCAACACATTTTCTGGTGTGCATTGTTACAATAAGGCCACTGGCTTTGGAGGTACTGGTATATATTTGAAACTACCCGGTTTAACTCAAACTAGGATAGTGAATTCTTACATGGATTATACTAGTATTGTTGCTGAAGACCCTGTTCAACTTCATATCTCTAGCAGTTTCTTCCTTGGTGATGCAAATATTGTCCTAAAATCTATGAATGGTGTTGTAAATGGTGTCAGCATTGTTGATAACATGTTCTCGGGCAAAAATAGTGGCGTTGAAATTGTTCATTTGGACCAATCAAATAGTCCTTTCCATCAAGTTGATCAAGTTTTTGTTGACAGGAACATTGCTAGAGGGATGAAATTAAAGACAACAACTGCTAAAATGTCTATGCAAGGGAATGGAACATCATGGTCTTTTGATTTTAACAACATTCTGCTTTTTCCTAACCTTATTAAAAATGTTCAGTACTCATTAGGCTCCACATGCTGCACCTTCCCAAATCATGCTTTGAGGAATGTTTCGGAAAATCGAGTTGTGATCGAAACAAAGGAAGCAGTAAATGCAGACGTTTTTGTTATGGTGGATCAAAGTGTAGCAAGTTGA 1470 0.3993 MAKRSLLWSLLLGLLSCFIVVGTYGENLHHSRTISSGNYHEAMHRLKAFKTSLTRHESIASTPSYSPSPLPSQGVNNPHVYHVTAYGADPSGNSDSTEALLAAIADATKGPSERYLLEGINDLGGAQINLEGGNYMISQPLKLPVVGVGNLMIHGGTIRASNNFPADSYIIDLSKSSNKTPSPSYNFEYITLKDLLLDSNFRGGGISVINSLRINIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTAINLQGNDNAVTDVVIFSAAVGIMVTGQANTFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMNGVVNGVSIVDNMFSGKNSGVEIVHLDQSNSPFHQVDQVFVDRNIARGMKLKTTTAKMSMQGNGTSWSFDFNNILLFPNLIKNVQYSLGSTCCTFPNHALRNVSENRVVIETKEAVNADVFVMVDQSVAS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0098 489 Pfam Pectate lyase superfamily protein 83 305 IPR024535 -
Lan4g0098 489 SUPERFAMILY Pectin lyase-like 79 463 IPR011050 -
Lan4g0098 489 Gene3D - 80 486 IPR012334 -
Lan4g0098 489 SMART pbh1 358 384 IPR006626 -
Lan4g0098 489 SMART pbh1 211 233 IPR006626 -
Lan4g0098 489 SMART pbh1 268 289 IPR006626 -
Lan4g0098 489 PANTHER POLYGALACTURONASE QRT3-LIKE PROTEIN 1 489 - -
Lan4g0098 489 PANTHER POLYGALACTURONASE QRT3 1 489 IPR039279 GO:0004650
Lan4g0098 489 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0098 Lan-Chr4 1405024 1407724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0098 - - gmx:100804107 781.556