Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0095 ATGCCAAAGTGTTCAACTTCTCACACAACCCTTTTCGCACGCTCACTCCGAACACCTTTCAAACCATGTCCTTTTTCAACCCAAACATTTACTTCTTCACCCATAACCCTTCCTTCCAACCAACCCAATGATCCTACCCTTTCATCTCAAATCTTCAATTCGTCTACCCAAATGGCTTCTCACGAAAGGGTTTCTTTCAAAACAGGTGATTTATCTTTCTATTCCCTCATTCAGAGTTACTCTAATTCCCTTGATTTTGGTTCATTGGATAAGGTTTTGACTCAAATGAAGTTCGAAAGGCGACTTTTTTTGGAAAAGAATTTCATTCTTATGTTTAAAGCTTATGGGAAAGCCCATTTGCCTGATAAAGCTGTGGACTTGTTTCATAGAATGGGGGATGAGTTTCAATGCAGGCAAACTGTTAAGTCTTTGAATTCGGTTCTTAATGTGATTATTCAAGAGGGTTTCTTTAATCGCGCGTTGGATTTTTATTCTGATGTTATTGCATCCAAGGGTTTGAGTATTCAACCAAATGGACTTACTTTTAACTTGATTATCAAGGCGTTGTGTAAGCTCGGTTCAGTTGATCATGCAGTTGAGGTGTTCAGGGGAATGCCGCTTAGGAATTGTGCTCCTGATAATTATACTTACTCTACACTTATGGACGGGTTGTGCAAGGAGGATAGAATTGATGAGGCAATTTCGTTATTGGATGAGATGCAGATTGAAGGTACATTCCCGAACCATGTCGCGTTCAATGTGTTGATCAATGCGTTGTGCAAGAAGGGTGACTTGGGACGTGCTTCCAAGCTTGTTGATAATATGTTTCTGAAAGGATGTGTCCCAAATGAGGTGACATATAATGCCCTTGTTCATGGGCTGTGTCTTAAAGGGAAGTTGGATAAGGCGGTGAGCCTATTGAATCGAATGGTGTTGAATAAATGCATGCCGAATGATGTTACTTATGGAACACTCATTGATGGGTTTGTTAAGAAAGGTAGAGCTGCTGATGGGGCTTCTGTGTTAACCTCTATGGAAGAGAGAGGTCATCATGGGAATGAGTACATGTACTCTTCTCTTATTAGTGGCCTGTTCAAGGAGGGAAAGCCTGAGCATGCAATGCGGCTGTGGAAGGAAATGGTGGAGAAAGGATGTAAACCAAACACTGTAGTATATAGTACTCTTATAGATGGTCTTTGTCGGGAAGGGAAGCTAGAAGAAGCAAGGGAAATGCTATTTGAGATGAAGAATAAAGGTTACCTGCCCAATGCTTTCACTTATAGCTCCCTAATGAAGGGGTTTTTCAGTACAGGTGATAGCCATAAAGCGATTCTTGTTTGGAAAGAGATGGCTGATAATAACTGTAGTCATAATGAGGTTTGTTACAGTATACTCATTAATGGATTGTGCAAGGATGGTAAGCTTACGGAGGCCTTAATGGTGTGGAAGCAAATGCTGAGTAGAGGAATTAAACTAGATGTTGTGGCGTACAGTTCAATGATTCATGGCTTTTGTAATGCTAATTTAGTCGATCAAGGCCTGAAACTTTTCCATCAAATGCTTTATCAGGAGCCCCAGTCACAACCAGACGTGATTACATATAACATACTTTTAAATGCTTTGTGCATGCAGAATAGAATCTCCCGTGCAATTGATCTTCTAAACATGATGCTAGATCAAGGTTGTGACCCTGATTTTATTACCTGCGATATTTTCTTGAAAACTTTAAGAGAAAAAGTTAACCCACCTCAAGATGGGAGAGAGTTTCTAGATGAGCTTGTAGTCCGGTTAGTTAAGCGACAGAAAACAATAGGTGCTTCCAAAATTATAGAAGTGATGTTACACAAGTTTTTACTGCCAAAAGCTTCTACCTGGGCAATAGTTGTTCAACAGCTGTATAAACCTAAGAAAATTCGATTAGCCATTAATGAATGTTGGAGCAGGCTATATCACTGA 1956 0.4003 MPKCSTSHTTLFARSLRTPFKPCPFSTQTFTSSPITLPSNQPNDPTLSSQIFNSSTQMASHERVSFKTGDLSFYSLIQSYSNSLDFGSLDKVLTQMKFERRLFLEKNFILMFKAYGKAHLPDKAVDLFHRMGDEFQCRQTVKSLNSVLNVIIQEGFFNRALDFYSDVIASKGLSIQPNGLTFNLIIKALCKLGSVDHAVEVFRGMPLRNCAPDNYTYSTLMDGLCKEDRIDEAISLLDEMQIEGTFPNHVAFNVLINALCKKGDLGRASKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLDKAVSLLNRMVLNKCMPNDVTYGTLIDGFVKKGRAADGASVLTSMEERGHHGNEYMYSSLISGLFKEGKPEHAMRLWKEMVEKGCKPNTVVYSTLIDGLCREGKLEEAREMLFEMKNKGYLPNAFTYSSLMKGFFSTGDSHKAILVWKEMADNNCSHNEVCYSILINGLCKDGKLTEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVDQGLKLFHQMLYQEPQSQPDVITYNILLNALCMQNRISRAIDLLNMMLDQGCDPDFITCDIFLKTLREKVNPPQDGREFLDELVVRLVKRQKTIGASKIIEVMLHKFLLPKASTWAIVVQQLYKPKKIRLAINECWSRLYH* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Lan4g0095 651 Pfam PPR repeat 244 275 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 215 248 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 181 213 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 495 521 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 250 284 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 460 494 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 355 389 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 532 565 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Lan4g0095 651 TIGRFAM PPR: pentatricopeptide repeat domain 320 353 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Lan4g0095 651 SUPERFAMILY HCP-like 355 564 - -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Lan4g0095 651 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 62 649 - -
Lan4g0095 651 Gene3D Tetratricopeptide repeat domain 525 650 IPR011990 GO:0005515
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Lan4g0095 651 Pfam PPR repeat family 387 435 IPR002885 -
Lan4g0095 651 Pfam PPR repeat family 529 576 IPR002885 -
Lan4g0095 651 Pfam PPR repeat family 282 331 IPR002885 -
Lan4g0095 651 Pfam PPR repeat family 458 506 IPR002885 -
Lan4g0095 651 Pfam PPR repeat family 177 226 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Lan4g0095 651 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 62 649 - -
Lan4g0095 651 Pfam PPR repeat 111 132 IPR002885 -
Lan4g0095 651 Pfam PPR repeat 355 385 IPR002885 -
Lan4g0095 651 Gene3D Tetratricopeptide repeat domain 453 524 IPR011990 GO:0005515
Lan4g0095 651 Gene3D Tetratricopeptide repeat domain 311 380 IPR011990 GO:0005515
Lan4g0095 651 Gene3D Tetratricopeptide repeat domain 381 452 IPR011990 GO:0005515
Lan4g0095 651 Gene3D Tetratricopeptide repeat domain 43 241 IPR011990 GO:0005515
Lan4g0095 651 Gene3D Tetratricopeptide repeat domain 242 310 IPR011990 GO:0005515
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Lan4g0095 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0095 Lan-Chr4 1351148 1356114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0095 141 610 Glycosyltransferase AT1G05670 27.234 6.52e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0095 - - gmx:100801994 1005.36