Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0072 ATGGAGAGAATAATGATGAAGGTTCAGAGGTTAAGATATTCACCTTATAATTTTCCTTCTTTCTCTCATTCATGGAGGAACCCTAATTGCTTCATCCATTCGCTGTCATCATCTCCCTCCCACCATTCTTCATTAACCGACCATAGGGTACTCCACCGGGTTCTTCAACGCTGTAAAGTTTCTATGGATTTCAAAACCGTAGGTAAAACACATGCACGGATTATTGTACTTGGTTATGTTGCTTACCCATCACTTGTGGCATCTCTGATTTCAACATATGCTAGATGTCAAAAATTTCACATTTCCCATCAAGTTCTTCGTTACATTATCTCCCATGTTTCGGTTTTATTCAAAATGAATATAATAATTGAAAACTTGGTGAAAGTTGGGGAATGTGATATTGCTAAGAAGCTGTTTGATAAAATGTCTGTTAGAGATGTTGTCACATGGAACACCCTGATTGGAGGTTATGTGAAAAATTCTCGCTTTCTTGATGCATTGAGAATTTTCAAGGGGATGCTCAATGCCAAGGTTGAGCCTGATGGGTTTACGTTTGCATCTGTAATTACTGGGTGTGCGAGACTCGGGGCTCTTGGAAATGCCAAGTGGGTGCATGCTTTGATGGCTGAGAAAAGGATTGAACTGAATTATATATTGAGTGCTGCGTTGATTGATATGTATGCTAAGTGTGGTAGAATTGATGTTTCAAAGCAAGTTTTCAAAGATGTTAAACGTGATCATGTGTCTGTTTGGAATGCAATGATTAATGGGTTAGCGAGTCACGGACTTGCTTTGGATGCAACTGTTGTGTTTTCAAGGATGGAACTGGAAAATGTTTTGCCGGATTATGTTACTTTTATTGGGATTCTGGCAGCTTGTAGCCATGCTGGATTGGTTGAAGAAGGTCGCAAGTACTTTGATATGATGCATAATCGTTTCTTGATTCAGCCACAACTTGAGCATTATGGAACTATGGTTGATCTCTTGGGACGATCAGGGCTCTTGGAGGATGCCTATGCCATGATTAAGGCTATGCCGATGGAGCCTGATGTTGTTATCTGGAGAGCGCTTCTGAGTGCTTGTAGAACCCATAGAAAGAAAGAACTTGGTGAAATTGCCATTGCAAAGATATCCCATGCAGAGAGTGGAGATTTTGTTTTACTGTCAAATATGTACTGCTCTTTAAATAACTGGAGTAGTGCTGAGAGAGTGCGACAGATGATGAAAAAGGGAGGAGTTCATAAGAAACGTGGTAAGAGTTGGATTGAATTGGGGGACAGCATTCATCAATTCAAGGCAGCTGATCAGTCACATGCTGAAATGAAAGCAATTTACAGAGTACTGGAAGGTTTGATTCAGAGAGCTAAGTTGGAGGGCTTCACGCCCTTAACAGATCTGGTTTTGATGGATGTTTCTGAAGAGGAAAAGGAGGAAAATTTATCTTTTCATAGTGAGAAATTGGCCTTGGCTTATGGAGTCCTGAAAAGCAGTCCGGGAACAAAAATCAGGATTTTCAAAAACCTTCGTATCTGTCAAGACTGTCATAATTGGATGAAAATTTTATCTACAATATTACAGAGAGAGATAATTGTGAGGGATCGCATCCGTTTTCACCAATTTGAAGGTGGATTTTGCTCTTGTGGAGACTACTGGTAG 1656 0.4016 MERIMMKVQRLRYSPYNFPSFSHSWRNPNCFIHSLSSSPSHHSSLTDHRVLHRVLQRCKVSMDFKTVGKTHARIIVLGYVAYPSLVASLISTYARCQKFHISHQVLRYIISHVSVLFKMNIIIENLVKVGECDIAKKLFDKMSVRDVVTWNTLIGGYVKNSRFLDALRIFKGMLNAKVEPDGFTFASVITGCARLGALGNAKWVHALMAEKRIELNYILSAALIDMYAKCGRIDVSKQVFKDVKRDHVSVWNAMINGLASHGLALDATVVFSRMELENVLPDYVTFIGILAACSHAGLVEEGRKYFDMMHNRFLIQPQLEHYGTMVDLLGRSGLLEDAYAMIKAMPMEPDVVIWRALLSACRTHRKKELGEIAIAKISHAESGDFVLLSNMYCSLNNWSSAERVRQMMKKGGVHKKRGKSWIELGDSIHQFKAADQSHAEMKAIYRVLEGLIQRAKLEGFTPLTDLVLMDVSEEEKEENLSFHSEKLALAYGVLKSSPGTKIRIFKNLRICQDCHNWMKILSTILQREIIVRDRIRFHQFEGGFCSCGDYW* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0072 551 Gene3D Tetratricopeptide repeat domain 226 444 IPR011990 GO:0005515
Lan4g0072 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lan4g0072 551 PANTHER OS07G0578800 PROTEIN-RELATED 36 497 IPR045215 GO:0003723|GO:0009451
Lan4g0072 551 Gene3D Tetratricopeptide repeat domain 104 225 IPR011990 GO:0005515
Lan4g0072 551 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 497 - -
Lan4g0072 551 Pfam DYW family of nucleic acid deaminases 459 551 IPR032867 GO:0008270
Lan4g0072 551 Pfam E motif 364 423 IPR046848 -
Lan4g0072 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Lan4g0072 551 Pfam PPR repeat family 145 194 IPR002885 -
Lan4g0072 551 TIGRFAM PPR: pentatricopeptide repeat domain 250 282 IPR002885 -
Lan4g0072 551 TIGRFAM PPR: pentatricopeptide repeat domain 148 181 IPR002885 -
Lan4g0072 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Lan4g0072 551 Pfam PPR repeat 250 278 IPR002885 -
Lan4g0072 551 Pfam PPR repeat 222 246 IPR002885 -
Lan4g0072 551 Pfam PPR repeat 284 311 IPR002885 -
Lan4g0072 551 Pfam PPR repeat 321 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0072 Lan-Chr4 930801 933370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0072 120 551 Glycoside Hydrolase AT3G49170 40.319 9.10e-113 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0072 - - lang:109344997 1104.35