Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1614 ATGGGTGTTAGTGCTGCTTCCGTACTGAAGCACCTCCTCCACCACCGCAACCTGAAGCCACAACCACCCACCGCCGCCACCTCCACCGCTGCAGTAACCACCAAAATCCTCACATACCTTAAATCAGGTCGCATTCGAAAAGCAGCCTCTACCCTCTTTGCTTTCCCAGCACCCTTCTCCTACGACCTCTACGCTCACCTCTTACGCGCGTGTTCCCTCCACCGCCACGCCATTGTGGAAGCCCGCAAGGTTGAATCCCACCTCCTTACCTTCTCCCCCAACCCCCCAATTTTTCTCCTCAACCGCGCCATTGAAGCTTATGCGAAATGCGGCTCTCTCCGTGATGCAAGGGAACTGTTTGATGAAATGCCGCAACGAGATGGGGGTACTTGGAATGCCCTTATTACTGCTTATTCTCAATTTGGTTTCCCAAGTGAAGCTTTAAACTTTTTTCTGTGTATGAATAGGAGCGGTGTTCGTGCTAATGAGATCACGTTTGCTGGTGTTCTTGGATCATGTGCTGTTGCTGGTGAACTTGTGTTGTCAATGCAGGTTCATGGGTTGGTTACAAAATTTGGTTTTTGTGGCAATGTGATATTGGAGAGTTCACTTGTCGATGTTTATGCGAAATGTGGGGTTATTGTTGATGCGCGCAAGATGTTTCATGAGATTCTGCATCCCAATGCGGTCACTTGGAATGTCATTGTGAGAAGGTATCTTGATGTTGGCAATGCGAAGGAAGCGGTTTTCATGTTCTCGCGGATGTTTCCGGCTGCTGTTAGGCCATTGAATTTCACCTTCTCTAATGCACTTGTTGCTTGTTCGAGTATAGCTGCGCTTGAGGAGGGGATGCAAATTCATGGAGTTGTTGTGAAGTTGGGTCTCCAAGAGGATAATGTTGTTTCGAGCTCGCTTATCAACTTGTATGTGAAGTGTCGTAAACTAGAGGATGGTTATGAGGTATTTGATCAGCTTGGTTCAAAGGATTTGGTGTCTTGGACTTCAATTGTTTCGGGGTATGCTATGGGTGGGAAAACTTGGGAGGCTAGAAAACTTTTTAATGAGATGCCTGAACGTAATGTAATCTCATGGAATGCGATGCTGGCAGGGTATACTAGGTTTTCTGAATGGTATGAGGCATTAGATTTTGTACATCTGATGCTTAATACAATTAAAGATTTGGATCATGTCACTCTTAGTTTGATGTTAAATGTCTCTGCAGGCCTTTTAGATCATGAAATGGGGAAGAATGTTCATGGCTACATCTATCGGCATGGTTTACACTCGAACCTTATGGTCGGCAATGCCCTTCTTGACATGTATGGAAAATGTGGGAACTTGAACAGTGCCAGAGTTTGGTTTAACCAGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTGTTGGCTACCTACGGTAATCATCATTTAAGTGAACAAGCGCTAACAATATTCTCAGAGATGCAGTGGGAGACAAAACCAACTAAGTATACATTTGGAACCCTTTTGGCAGCATCTGCTAATACCTTTTCTCTTTACCTTGGTAAACAAATTCATGGATTCATCATTAGACATGAATTTCAGATAGATACTATAATCAGAACTGCTTTGGTTTACATGTACTCTAAATGCCGTTGTCTTGAGTATGCTATTGAGGTTCTGAAGGGGGCAGTTTCCAGGGATGTGATCATTTGGAATACCATAATCTTGGGGTGCTGTCACAATCATAGGGGTAAAGAGGCGCTTGAACTTTTTGGTGCAATGGAAGCAGAAAACATCAAGCCAGACCATGTGACCTTTCATGGCATTCTGCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTATGGTGCCAAATGCTTTAAATCAATGAGTAATGAATACTGTGTCCTGCCTCGGCTTGAGCATTATGACTGCATGATTGAGCTCTACAGTCGGCATGGATACATGGATGAGCTTGAGAGATTTATCAAGACAATGCCAATAGATCCCACTATTTCTATGTTGACAAGAGCCCTTGACGCCTGTCAGAAAAATGAGCATGCAAGATTGGGAGAATGGATTGCAGAAAAGATTAATGAATTTCAACATTAA 2094 0.4398 MGVSAASVLKHLLHHRNLKPQPPTAATSTAAVTTKILTYLKSGRIRKAASTLFAFPAPFSYDLYAHLLRACSLHRHAIVEARKVESHLLTFSPNPPIFLLNRAIEAYAKCGSLRDARELFDEMPQRDGGTWNALITAYSQFGFPSEALNFFLCMNRSGVRANEITFAGVLGSCAVAGELVLSMQVHGLVTKFGFCGNVILESSLVDVYAKCGVIVDARKMFHEILHPNAVTWNVIVRRYLDVGNAKEAVFMFSRMFPAAVRPLNFTFSNALVACSSIAALEEGMQIHGVVVKLGLQEDNVVSSSLINLYVKCRKLEDGYEVFDQLGSKDLVSWTSIVSGYAMGGKTWEARKLFNEMPERNVISWNAMLAGYTRFSEWYEALDFVHLMLNTIKDLDHVTLSLMLNVSAGLLDHEMGKNVHGYIYRHGLHSNLMVGNALLDMYGKCGNLNSARVWFNQMSNWRDRVSWNALLATYGNHHLSEQALTIFSEMQWETKPTKYTFGTLLAASANTFSLYLGKQIHGFIIRHEFQIDTIIRTALVYMYSKCRCLEYAIEVLKGAVSRDVIIWNTIILGCCHNHRGKEALELFGAMEAENIKPDHVTFHGILLACVEEGLVEYGAKCFKSMSNEYCVLPRLEHYDCMIELYSRHGYMDELERFIKTMPIDPTISMLTRALDACQKNEHARLGEWIAEKINEFQH* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1614 697 Pfam PPR repeat family 561 608 IPR002885 -
Lan3g1614 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Lan3g1614 697 Gene3D Tetratricopeptide repeat domain 515 630 IPR011990 GO:0005515
Lan3g1614 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 331 361 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 464 490 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 130 159 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 636 660 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 103 126 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 230 255 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 303 328 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 435 458 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 202 224 IPR002885 -
Lan3g1614 697 Pfam PPR repeat 362 388 IPR002885 -
Lan3g1614 697 Gene3D Tetratricopeptide repeat domain 29 184 IPR011990 GO:0005515
Lan3g1614 697 Gene3D Tetratricopeptide repeat domain 260 413 IPR011990 GO:0005515
Lan3g1614 697 TIGRFAM PPR: pentatricopeptide repeat domain 565 597 IPR002885 -
Lan3g1614 697 TIGRFAM PPR: pentatricopeptide repeat domain 331 361 IPR002885 -
Lan3g1614 697 TIGRFAM PPR: pentatricopeptide repeat domain 104 126 IPR002885 -
Lan3g1614 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 499 570 - -
Lan3g1614 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 571 695 - -
Lan3g1614 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 483 - -
Lan3g1614 697 Gene3D Tetratricopeptide repeat domain 414 514 IPR011990 GO:0005515
Lan3g1614 697 Gene3D Tetratricopeptide repeat domain 185 259 IPR011990 GO:0005515
Lan3g1614 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Lan3g1614 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 126 IPR002885 -
Lan3g1614 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 571 695 - -
Lan3g1614 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 483 - -
Lan3g1614 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 499 570 - -
Lan3g1614 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1614 Lan-Chr3 27953552 27956763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1614 18 696 Glycoside Hydrolase AT3G49170 28.220 2.38e-82 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1614 - - gmx:100775626 1090.49