Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1555 ATGGATTTCATTCCCTTTCACGATGGAAACATACATAGTTTTCTTCAGTCCCGTTACCTTCACACTCGCTATGATGTTAATCATAGTTTGCAGACACACTCCTCGTTGGTTCGGAGGCTTTCTCAAGAGCGAGAGTTAGAGGGGCATCTTGGTTGTGTTAATGCTGTGGCTTGGAATTCCAAAGGTTCATTATTGATATCTGGATCAGATGACACACGGATCAATATTTGGAGCTATTCTGACCGAAAACTCTTGCATTCAATTGATACCGGACATTCTGCAAACATATTCTGTACTAAGTTTGTACCAGAAACTTCTGATGAGCTTGTGGTCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTTAATTTGTCTTGCTTAAGTGGGAGAGGACCAGGCAATAATGCCGTTGTTCCATCAGCTCTTTACCAATGCCATACTAGAAGAGTAAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTGGTATGGAGTGCTAGTGAAGATGGGACCCTGAGACAGCATGATTTCCGAGAAGGTACATCTTGTCCTCCAGCGGGATCTTCACACCAAGAGTGTCGAAATGTTCTACTTGACCTACGGAGTGGAGCTAAGAGGTCACTTGCTGATCCTCCTAAACAAGTCCTTGCTCTAAAATCTTGTGATATCAGTACAACTAGACCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGTTTATATGATAGGAGGATGCTACCACCTCTAAGCTCCTGTCGGAAAAGAATGTCACCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATTGTGGACATCCAAGCGTGCACTTAACTCATGTTGCATTCAGTCCTGATGGATATGAGGTTCTACTTAGCTATAGTGGGGAGCATGTTTACTTGATGGATGTAAATCATGCTGGAGTGAATGAGATGCAATATACTTCAGGAGATGTTTCAAAGCTAATGACTTACTCTCCAACAACTGATGGGGTAGAATTGCAGCCTTTTGTCTCTAATGTCTTCCCAAATGATTTTCCTGTTAAAAAGAACATCGCTGAAAAGCATGACATGTGCAAGAAGCTATTAAAATTTGCTAAGAAGTCACTGAACAAGGGGACGACACCCCATTATGGAATAGAGGCTTGTAATGAAGTTTTGAATGGCCAGAGTCATGTTGTCGGGCCTGCACTAAAATATCAATGCCTGTGTATTCGTGCTGCACTATTACTTCAGAGGAAGTGGAAAAACGATGCTTATATGGCCATAAGAGACTGTTATGCTGCTAGGAAAATTGATAATTCCTCATATAAACCACTTTACTACATGTCAGAAGCATTGTCACAGTTGCATAGACACAAAGATGCTTTAGATTTTGCTGTTGCTTCCCACTCATTGGCCCCATCCATATCTGAAGTTTCAGAAAGAGTAGAGAAGGCGAAGAAGGATATAGCTTCAGCTGAATTTGAGAAGAGTATTAAGGCAAACCATGGAGCATCAATGTTTCATACTCGAGGTGGAAGAATATTATCATTGAATGACATGCTCTATCGTTCAGAAGCTAATAGTGATGCTTCACAAGATGGTCCAATATCAGAGAGGGATGATTCTGATTACGATGAAGAATTGGAGTTGGACTTCGAAACATCTATATCTGGTGATGAGGGACATGATGATGAATCCAATATTCTTCATGGGAGTTTAAATCTTAGAATTCATCAGAGAGATGACTCCGGAGAAAATGCAATTGCAAATGGCTTGTGTGAATCATCCTCATCTTCCTCGCAGAACAATGGAGCTTGTTATCAGGCTGAAGCAGTTATTGATATGAGGCAGAGATTTGTTGGCCACTGCAATGTTGGAACTGATATAAAGCAAGCCAGTTTTCTTGGTCAAAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGTAGATGGTTTATTTGGGAAAAGAAGACTGGTAGGCTCATAAAAATGCTGAATGGTGATGAATCCGTTGTAAATTGTATACAATGCCATCCATTTGATTTTGTTGTGGCAACTAGTGGGATTGACAGCACAATAAAGATATGGACTCCAAGTGCTCCTCTTCCATCTTCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGGGACGTGTTGACTGCTATGGAGAACAATCAAGAGAAGTTATCCCTTAGTCGTGATACTATCCTGCCCTTTGAGCTTTTGGAACCACTTAGAATGCATGATTTTCCTGATGGAGCACTGCGATTACGCCCATTTGAATGCGCCCAAAGCTAA 2295 0.417 MDFIPFHDGNIHSFLQSRYLHTRYDVNHSLQTHSSLVRRLSQERELEGHLGCVNAVAWNSKGSLLISGSDDTRINIWSYSDRKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSCLSGRGPGNNAVVPSALYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNVLLDLRSGAKRSLADPPKQVLALKSCDISTTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDCGHPSVHLTHVAFSPDGYEVLLSYSGEHVYLMDVNHAGVNEMQYTSGDVSKLMTYSPTTDGVELQPFVSNVFPNDFPVKKNIAEKHDMCKKLLKFAKKSLNKGTTPHYGIEACNEVLNGQSHVVGPALKYQCLCIRAALLLQRKWKNDAYMAIRDCYAARKIDNSSYKPLYYMSEALSQLHRHKDALDFAVASHSLAPSISEVSERVEKAKKDIASAEFEKSIKANHGASMFHTRGGRILSLNDMLYRSEANSDASQDGPISERDDSDYDEELELDFETSISGDEGHDDESNILHGSLNLRIHQRDDSGENAIANGLCESSSSSSQNNGACYQAEAVIDMRQRFVGHCNVGTDIKQASFLGQRGEYVASGSDDGRWFIWEKKTGRLIKMLNGDESVVNCIQCHPFDFVVATSGIDSTIKIWTPSAPLPSSVAGGSAGPETGDVLTAMENNQEKLSLSRDTILPFELLEPLRMHDFPDGALRLRPFECAQS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1555 764 Gene3D Tetratricopeptide repeat domain 352 505 IPR011990 GO:0005515
Lan3g1555 764 SUPERFAMILY WD40 repeat-like 39 695 IPR036322 GO:0005515
Lan3g1555 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Lan3g1555 764 Coils Coil 762 764 - -
Lan3g1555 764 Gene3D - 24 338 IPR015943 GO:0005515
Lan3g1555 764 Gene3D - 553 700 IPR015943 GO:0005515
Lan3g1555 764 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 23 735 IPR045151 -
Lan3g1555 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Lan3g1555 764 Coils Coil 474 494 - -
Lan3g1555 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Lan3g1555 764 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 23 735 - -
Lan3g1555 764 SUPERFAMILY TPR-like 404 515 IPR011990 GO:0005515
Lan3g1555 764 SMART WD40_4 611 654 IPR001680 GO:0005515
Lan3g1555 764 SMART WD40_4 657 696 IPR001680 GO:0005515
Lan3g1555 764 SMART WD40_4 39 78 IPR001680 GO:0005515
Lan3g1555 764 SMART WD40_4 136 176 IPR001680 GO:0005515
Lan3g1555 764 SMART WD40_4 211 244 IPR001680 GO:0005515
Lan3g1555 764 SMART WD40_4 265 307 IPR001680 GO:0005515
Lan3g1555 764 SMART WD40_4 81 123 IPR001680 GO:0005515
Lan3g1555 764 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Lan3g1555 764 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1555 Lan-Chr3 27012745 27023164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1555 638 751 Miscellaneous Gene Families AT5G08390 29.310 3.89e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1555 K11807 - gmx:100793917 1265.75