Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1548 ATGAACATTAAGTTCATCACTCCCTTTATACTTCTCTCTTTACTTTCCCTCACTACTACCACTTCCCTTGACCCTTGTGCCTCTCAATCCGATGACTCAAATCTCGATGTCATTCCCATCTACGGCAAATGTTCTCCCTTCAATCCACCCAAGGCTGACTCATGGGCCAACACCCTCATTAACATGGCATCCAAAGACCTAGCCCGAGTCAGGTACTTGTCCACCCTGGTGGGCCAAAAGAACATTGTCTCAACCCCAATTGCTTCGGGCCAGGCCTTCGATATTGGTAATTACATTGTTCGGGTCAAAATTGGAACCCCGGGCCAGCTATTCTTCATGGTCTTGGACACTAGCACTGATGAGGCCTTCGTCCCATGCTTGGGTTGCTTGGGCTGCTCCGCCACGACCTTTTCACCCAATTCCTCCACTAGCTACGACCCATTGGATTGCTCCGTCCCACAATGCGGCCAGGTCCGTGGGCTTTCCTGCCCGGCTGGAGGTTCTGGCACATGCTTCTTCAACCAATCATATGCAGGTTCCTCGTTCTCTGCCGTACTTGTCCAAGATTCATTAAGATTAGCCACTGATGTCATTCCCAACTATTCATTCGGATGCATCAACGCCATCTCTGGTGGATCCGTTCCAGCTCAAGGGCTTTTGGGCTTGGGTCGTGGGCCTCTATCGTTGCTCTCACAATCTGGCACACACTATTCTGGTGTATTCTCCTATTGTCTTCCTAGCTTCAAATCATACTATTTCTCCGGGTCACTCAAACTTGGGCCCGTGGGCCAGCCCAAGAGCATCAAAACAACACCACTTCTACATAGCCCACATCGGCCTTCACTATACTACGTGAACCTCACTGGTATCAGCGTGGGCCATGTACTCGTACCCGTACCTAAGCAGTATCTCACATTTGACCCAACCACTGGATCAGGAACCGTGATTGATTCGGGCACAGTAATAACCCGGTTCGTTGAGCCTGTTTATAATGCAGTAAGAGATGAATTTAGGAAGCAGGTATCAGGCCCATTCTCAAGCCTGGGAGCATTTGACACATGTTTTGTGAAAACTTTCGAGACCCTTGCACCACCGGTTGCACTGCATTTTGAAGGGTTGGATCTAAAGCTACCATCTGAGAATAGCTTGATACATAGTAGTTCTGGGTCATTGGCTTGTCTTGCAATGGCTGCAGCACCAAATAATGTGAACTCAGTGTTGAACGTGATTGCCAACTTGCAACAACAGAACCTTAGGATTTTGTTTGATACAGTTAAAAATAAGGTTGGTATAGCCCGTGAGCTTTGTAACTAG 1314 0.4825 MNIKFITPFILLSLLSLTTTTSLDPCASQSDDSNLDVIPIYGKCSPFNPPKADSWANTLINMASKDLARVRYLSTLVGQKNIVSTPIASGQAFDIGNYIVRVKIGTPGQLFFMVLDTSTDEAFVPCLGCLGCSATTFSPNSSTSYDPLDCSVPQCGQVRGLSCPAGGSGTCFFNQSYAGSSFSAVLVQDSLRLATDVIPNYSFGCINAISGGSVPAQGLLGLGRGPLSLLSQSGTHYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIKTTPLLHSPHRPSLYYVNLTGISVGHVLVPVPKQYLTFDPTTGSGTVIDSGTVITRFVEPVYNAVRDEFRKQVSGPFSSLGAFDTCFVKTFETLAPPVALHFEGLDLKLPSENSLIHSSSGSLACLAMAAAPNNVNSVLNVIANLQQQNLRILFDTVKNKVGIARELCN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1548 437 Gene3D Acid Proteases 261 437 IPR021109 -
Lan3g1548 437 Pfam Xylanase inhibitor N-terminal 98 260 IPR032861 -
Lan3g1548 437 SUPERFAMILY Acid proteases 92 436 IPR021109 -
Lan3g1548 437 ProSiteProfiles Peptidase family A1 domain profile. 98 432 IPR033121 -
Lan3g1548 437 PANTHER ASPARTYL PROTEASES 11 437 IPR001461 GO:0004190|GO:0006508
Lan3g1548 437 Pfam Xylanase inhibitor C-terminal 283 432 IPR032799 -
Lan3g1548 437 PANTHER ASPARTYL PROTEASE AED3-LIKE 11 437 - -
Lan3g1548 437 Gene3D Acid Proteases 75 260 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1548 Lan-Chr3 26972299 26973949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1548 89 437 Miscellaneous Gene Families AT1G77480 27.806 2.11e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1548 - - gmx:100816307 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0890 15 18182372 18183794 Lan3g1548 3 26972299 26973949 LSH
Lan14g0688 14 13828626 13830178 Lan3g1548 3 26972299 26973949 LSH