Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1507 ATGCAGGCTTCGCGGGCAAGGTTGTTCAAGGAGTACAAAGAGGTGCAACGAGAGAAATCGGCGGATCCTGATATTACACTAGTCTGTGATGATTCTAACATTTTTAAATGGAATGCCCTCATCAAGGGACCCTCGGAAACTCCTTACGAGGAAGGTGTCTTTCAGCTTGCTTTTTCTGTTCCAGAGCAGTATCCTTTACAGCCGCCTCAAGTCCGATTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACCGGGGAGATTTGTCTTGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACTCTTCAGTCTGTCTGTAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGTAATCTTCTGCGTTCAGGTGATGTTAGAGGGTTCCAGTCCATGGCAAGAATGTACACTAGGCTTGCTGCAATGCCAAAGAAAGGTTGA 474 0.4515 MQASRARLFKEYKEVQREKSADPDITLVCDDSNIFKWNALIKGPSETPYEEGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFQSMARMYTRLAAMPKKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1507 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Lan3g1507 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Lan3g1507 157 SMART ubc_7 6 153 - -
Lan3g1507 157 CDD UBCc 7 148 IPR000608 -
Lan3g1507 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
Lan3g1507 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Lan3g1507 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 157 - -
Lan3g1507 157 PANTHER BNAA09G04490D PROTEIN 3 157 - -
Lan3g1507 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1507 Lan-Chr3 26580189 26583231 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1507 7 123 Miscellaneous Gene Families AT3G17000 34.711 2.07e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1507 K10689 - cit:102618324 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1507 3 26580189 26583231 Lan3g1507 3 26580189 26583231 ECH
Lan15g0950 15 18824386 18827075 Lan3g1507 3 26580189 26583231 LSH