Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1439 ATGGCTTCTCTCACCGCTTCTAACTGCATCGCTTTCCGAACCTCTAACTTCGCCGTCTCCGATCACCGGAAAATCGTTCGTCCTCATCAATGGTCTCCGATTCCAACTCAACACTCTCGCATTCTTCGTTCCAGATCTAACACTTCCGTTACCTCCTCTGGTCTGAGAGCTCAAGCTGCAACTCTAGAAGAAGTGGGAATTGGATCAGTTGAGAAAGTGGAAGCGCCAGTCGTGATAGTGACTGGAGCTTCCAGAGGCATTGGAAGAGCAATTGCTCTCTCTCTTGGTAAAGCAGGTTGCAAGGTGCTGGTCAACTACGCAAGGTCATCCAAGGAAGCCGAGGAAGTTTCAAAGGAGATTGAAGCATCTGGTGGACAAGCTCTTACATTTGGTGGAGATGTTTCTAAAGAGGCTGACGTAGACGCTATGATAAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTATTGATAAACAATGCAGGAATTACTAAAGATGGGTTGTTGATGAGAATGAAGAAATCTCAGTGGCAGGATGTTATTGACCTAAATCTCACTGGCGTTTTTCTTTGTACACAGGCAGCAGCTAAGATTATGATGAAGAAGAGGAAGGGAAGGATAATCAATATCGCATCGGTTGTTGGTCTAGTTGGAAATGTCGGACAAGCCAACTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTAACTAAAACTGTTGCAAAGGAATATTCTAGCAGAAGCATAACGGTTAATGCCGTTGCCCCCGGATTTATTGCATCTGACATGACTGCCAAACTTGGAGATGACATCGAGAAAAAGATTTTGGAGACAATCCCATTAGGAAGATATGGTCAACCAGAAGAAGTTGCCGGTCTGGTGGAATTCTTGGCTCTTAATCCGGCTGCTAGTTACATCACCGGGCAGGTGCTCACCATTGATGGAGGTATGGTGATGTAG 957 0.4545 MASLTASNCIAFRTSNFAVSDHRKIVRPHQWSPIPTQHSRILRSRSNTSVTSSGLRAQAATLEEVGIGSVEKVEAPVVIVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEASGGQALTFGGDVSKEADVDAMIKTAVDAWGTVDVLINNAGITKDGLLMRMKKSQWQDVIDLNLTGVFLCTQAAAKIMMKKRKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRSITVNAVAPGFIASDMTAKLGDDIEKKILETIPLGRYGQPEEVAGLVEFLALNPAASYITGQVLTIDGGMVM* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1439 318 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 163 IPR002347 -
Lan3g1439 318 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 205 213 IPR002347 -
Lan3g1439 318 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 IPR002347 -
Lan3g1439 318 Gene3D - 75 318 - -
Lan3g1439 318 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 212 240 IPR020904 GO:0016491
Lan3g1439 318 Pfam Enoyl-(Acyl carrier protein) reductase 82 316 - -
Lan3g1439 318 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 38 318 - -
Lan3g1439 318 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 76 256 - -
Lan3g1439 318 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 38 318 - -
Lan3g1439 318 CDD BKR_SDR_c 77 317 - -
Lan3g1439 318 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 78 317 IPR011284 GO:0004316|GO:0006633|GO:0051287
Lan3g1439 318 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 318 IPR036291 -
Lan3g1439 318 PRINTS Glucose/ribitol dehydrogenase family signature 77 94 IPR002347 -
Lan3g1439 318 PRINTS Glucose/ribitol dehydrogenase family signature 152 163 IPR002347 -
Lan3g1439 318 PRINTS Glucose/ribitol dehydrogenase family signature 199 215 IPR002347 -
Lan3g1439 318 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
Lan3g1439 318 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Lan3g1439 318 PRINTS Glucose/ribitol dehydrogenase family signature 279 299 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1439 Lan-Chr3 25965195 25969928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1439 1 318 Acyl Lipid Metabolism Gene Families AT1G24360 66.667 7.80e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1439 K00059 - gmx:100806814 510.76