Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1414 ATGAAATGCTTATTTGCTATCCGTTTATTTCTTTTAGTTTCTTCAGCTTGCTTGTGTGCTAAAATAACACCTTCTATAGCTCTTAGTGTCAGCGTTTGTGATTATGGTGCCATGGGGGATGGCTACACAGATGATTCACAAGCTTTTTTGAAAGCATGGGAAGACGTGTGTGATGCTTCTGATCAGGTCACCTCAACACTTCTTATACCGAATGGGAAAACTTTCATGTTGCAGCCTATACAATTTAAGGGTCCTTGCAACCCTACAACCCTTATAGTTAAGGTTGAGGGAACTATCGTAGCCCCAAAGAGTATTGAAGAATGGCAATGGCCAAATGATGATGATGATAAGGACATATGGGTTCAGTTCTCACAAATAAATGGTCTTTTCATTCAAGGAGGAGGTCAATTTGATGGCCAAGGTTCTCCATGGTGGAAATATAAAGGTGACAAAGCAAGTTATAGACCCACTGCTCTAAATTTTCATCGTTGTGAAAATCTAAATCTTATGGATTTGACACATATTAATAGCCCGAAAAACCATATAAGCATAAATATGTGCAATGGTTCATACATATCCAATCTTCATATTATTGCACCTGAGGATAGCCCAAACACTGATGGAATTGATATCTCGGAATCTACAAACATAATCATTCTGAATTCTACAATGGAAACTGGTGATGATTGCGTTGCCATAAATGGTGGTACCTCATTCGTCAACATAAGTAATGTTTATTGTGGACCTGGCCATGGGATCAGTATTGGGAGTTTGGGAAAAAATGGAGCTTATGATGAAGTAGAAGAAATACATGTTCAAAATTGCACCTTTACTGGAACAACAAATGGAGCAAGAATCAAGACATGGGTTGGAGGACGTGGCTATGCTAGGAAGATCACATTTGAAGATATTATACTTGTTGATACTAAGAATCCTGTGATTATTAACCAACAATATGAAGATCATCATTTCATTAATAATAACGATGGGAAAGCAGTAGAAGTGAGTGATATTACTTACCGTAATATAAGTGGTACCTCATCATCTGAAGATGTAATCAACCTAAGTTGTGACGTTAACATAGGGTGCAATGGTATTGTAATGGAGAATATTAATATAACATCTGATTCTTCAGGAAATGAGGTATATGCATCTTGCACAAAAGCTGAGGGGTCAAGCTATTCATGTATTCCAACTCTATCATGTCTTTCTAGCTAA 1218 0.3727 MKCLFAIRLFLLVSSACLCAKITPSIALSVSVCDYGAMGDGYTDDSQAFLKAWEDVCDASDQVTSTLLIPNGKTFMLQPIQFKGPCNPTTLIVKVEGTIVAPKSIEEWQWPNDDDDKDIWVQFSQINGLFIQGGGQFDGQGSPWWKYKGDKASYRPTALNFHRCENLNLMDLTHINSPKNHISINMCNGSYISNLHIIAPEDSPNTDGIDISESTNIIILNSTMETGDDCVAINGGTSFVNISNVYCGPGHGISIGSLGKNGAYDEVEEIHVQNCTFTGTTNGARIKTWVGGRGYARKITFEDIILVDTKNPVIINQQYEDHHFINNNDGKAVEVSDITYRNISGTSSSEDVINLSCDVNIGCNGIVMENINITSDSSGNEVYASCTKAEGSSYSCIPTLSCLSS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1414 405 Pfam Glycosyl hydrolases family 28 60 390 IPR000743 GO:0004650|GO:0005975
Lan3g1414 405 PANTHER - 29 403 - -
Lan3g1414 405 Gene3D - 20 402 IPR012334 -
Lan3g1414 405 ProSitePatterns Polygalacturonase active site. 244 257 IPR000743 GO:0004650|GO:0005975
Lan3g1414 405 PANTHER - 29 403 - -
Lan3g1414 405 SUPERFAMILY Pectin lyase-like 21 403 IPR011050 -
Lan3g1414 405 SMART pbh1 214 235 IPR006626 -
Lan3g1414 405 SMART pbh1 363 384 IPR006626 -
Lan3g1414 405 SMART pbh1 296 317 IPR006626 -
Lan3g1414 405 SMART pbh1 237 257 IPR006626 -
Lan3g1414 405 SMART pbh1 187 213 IPR006626 -
Lan3g1414 405 SMART pbh1 267 288 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1414 Lan-Chr3 25778015 25781057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1414 1 395 Glycoside Hydrolase AT5G17200 42.206 3.19e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1414 K01184 - jre:108997191 420.624