Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1413 ATGGCACTGTTGGTAGAGAAAACCACAAGTGGTCGTGAATACAAGGTGAAGGACATGTCCCAAGCAGACTTTGGTCGTCTAGAAATAGAGCTAGCAGAAGTTGAAATGCCTGGTTTGATGGCATCTCGAACTGAGTTTGGTCCATCTCAGCCATTCAAAGGAGCTAAGATCACTGGCTCCCTTCACATGACTATCCAAACTGCTGTCCTCATTGAGACACTCACTTCCCTTGGTGCTGAAGTTAGATGGTGTTCATGCAACATCTTCTCCACTCAAGACCATGCTGCTGCTGCTATTGCACGTGATAGTGCTGCTGTCTTTGCATGGAAGGGTGAGACCCTTCAAGAGTATTGGTGGTGTACTGAGCGTGCCCTTGATTGGGGTCCTGGTGGTGGCCCTGACCTCATTGTTGATGATGGTGGTGATACAACACTTTTGATCCATGAAGGGGTTAAGGCTGAGGACATTTTTGAGAAGACTGGTCAGTTTCCTGATCCTGATTCAACTGATAATGCTGAGTTTAAGATTGTGTTGTCTATTATAAAGGATGGGTTGAAGACTGATCCTAAGAGGTATCATAAGATGAAGGATAGAGTTGTTGGTGTTTCTGAAGAGACAACTACTGGTGTTAAGAGGTTGTATCAGATGCAGGCTAATGGAACTCTCTTGTTCCCTGCTATCAATGTCAATGACTCTGTCACCAAGAGCAAGTTTGATAACTTGTATGGATGCCGGCACTCCCTCCCTGATGGACTGATGAGAGCGACAGATGTTATGATTGCTGGGAAAGTAGCAGTTGTTGCTGGATATGGAGATGTTGGAAAGGGTTGTGCTGCTGCATTGAAACAAGCAGGTGCTCGTGTCATAGTAACTGAGATTGATCCAATCTGTGCCCTTCAAGCTACAATGGAAGGTCTTCAAGTTCTAACCTTAGAAGATGTTGTCTCTGAAGTTGATATCTTTGTTACCACCACAGGCAACAAAGACATCATCATGCTTGATCACATGAAGAAAATGAAGAACAATGCCATTGTTTGCAACATTGGTCACTTTGACAATGAAATCGACATGCTTGGTCTTGAGACACACCCTGGTATCAAGCGCATCACCATCAAGCCTCAAACTGATAGGTGGGTCTTCCCTGAGACCAACACTGGCATCATTATCTTGGCAGAGGGTCGTTTGATGAACTTGGGTTGTGCAACAGGACACCCAAGTTTTGTTATGTCATGTTCATTCACCAACCAGGTTATTGCTCAGCTTGAGTTATGGAATGAGAAGACTTCTGGAAAGTATGAGAAGAAGGTTTATGTTCTGCCTAAGCATCTTGATGAGAAGGTTGCTGCACTTCACCTTGGAAAGCTTGGAGCTAGACTCACCAAGCTTAGCAAGGACCAAGCTGATTATATCAGTGTCCCTGTTGAGGGTCCATACAAGCCTTTCCACTATAGGTACTGA 1458 0.4472 MALLVEKTTSGREYKVKDMSQADFGRLEIELAEVEMPGLMASRTEFGPSQPFKGAKITGSLHMTIQTAVLIETLTSLGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEDIFEKTGQFPDPDSTDNAEFKIVLSIIKDGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEVDIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGIKRITIKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKTSGKYEKKVYVLPKHLDEKVAALHLGKLGARLTKLSKDQADYISVPVEGPYKPFHYRY* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1413 485 SMART AdoHcyase_2 13 484 IPR000043 -
Lan3g1413 485 Pfam S-adenosyl-L-homocysteine hydrolase 13 484 IPR000043 -
Lan3g1413 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 2. 262 279 IPR020082 -
Lan3g1413 485 TIGRFAM ahcY: adenosylhomocysteinase 14 477 IPR000043 -
Lan3g1413 485 SMART AdoHcyase_NAD_2 240 403 IPR015878 -
Lan3g1413 485 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 240 403 IPR015878 -
Lan3g1413 485 CDD SAHH 23 473 IPR000043 -
Lan3g1413 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 - -
Lan3g1413 485 Hamap S-inosyl-L-homocysteine hydrolase [ahcY]. 9 477 IPR000043 -
Lan3g1413 485 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 240 403 IPR036291 -
Lan3g1413 485 PANTHER ADENOSYLHOMOCYSTEINASE 1 485 IPR000043 -
Lan3g1413 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 380 485 - -
Lan3g1413 485 Gene3D - 243 404 - -
Lan3g1413 485 PIRSF SAHH 2 485 IPR000043 -
Lan3g1413 485 ProSitePatterns S-adenosyl-L-homocysteine hydrolase signature 1. 85 99 IPR020082 -
Lan3g1413 485 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 13 242 - -
Lan3g1413 485 Gene3D - 15 485 IPR042172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1413 Lan-Chr3 25766486 25768648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1413 K01251 - pvy:116136948 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0012 15 97841 99757 Lan3g1413 3 25766486 25768648 LSH