Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1404 ATGAAGAAGAAGAAGCATGTCCCTGACTGGCTCAACAGTTCTCTCTTCTCATCTTCCCCTTCCGATTACCCCTTCTATCCCGACGAACCTCTTTCTCCTCCTCCACCACCACCACCACCACCACCACCTGTCACCGTCATAGAACACGACGAAGACCCAATTCAAGATTCACCACCCACTTCTTCATCCTCTTCTTCCTTCCATGACATCTCCTCTCAACCTCAATTACTCACTGAGTTATCTAGGAAGGTCATAGACATGCGAGAGTTATGGAGAATCTCTTCTCAAGGTATACCTCATTCTTCTGCTTTACGATCTACTCTCTGGAAGCTTTTCCTTCGATATCTTCCACCCGATCGCGCCCTTTGGTCGTCTCAATTAGCAAACAAAAGATCTCAATACAAACATTTCAAAGACGACCTTCTCATCAATCCTTCAGAAATCACAAGGAGGATGTACAACTCCACAAGTTATGACACCGAATGTGCAAGCAGGCTCTTACTTTCTAGATCACAAATCACTCACAGGGATCACCCTTTGAGTCTTGACAACACCAGCATATGGAATAAGTTCTTCCAGGATTCGGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCAGATATGCACTTTTTCTCTAGCAATTCTCAAATTGCAAAATCTAATCAGGAGGCTCTAAGGAACATATTAATTATTTTTGCAAAGTTGAACCCAAGTATACGATATGTTCAAGGGATGAATGAGATATTGGCTCCTCTATTCTATGTGTTCAAAAATGACCCCGATGTGGAAAGCGCGGCCTTTGCTGAAGCAGACACATTCTTTTGTTTTGTTGAGCTATTAGATGGGTTCCGAGATAATTTTGTCCAACAACTTGATAATAGTGTTGTTGGAATTTGTTCGACAATTGCAAGATTGTCCCAGCTTTTGAAAGAGCACGATGAAGAACTTTGGCGTCATCTTGAGGTCACGACTAAAGTAAATCCCCAATTCTATGCATTTAGATGGATTACTCTCCTCTTGACACGGGAATTCAATTTTGCTGACATCCTTCATATCTGGGACACCCTTTTAAGTGATCCAGAGGGTCGACAGGAGACACTTCTGCGGATATGCTGTGCCATGCTAATTCTGGTTCGTAGGCGCCTTCTAGCTGGTGATTTCACTTCTAATCTCAAGTTGCTGCAAAGCTATCCCTCTACAAACATTAGTCATTTGCTCCATGTTGCCAATAAGTTACGTGTACAGTCAGTCTAA 1266 0.4273 MKKKKHVPDWLNSSLFSSSPSDYPFYPDEPLSPPPPPPPPPPPVTVIEHDEDPIQDSPPTSSSSSSFHDISSQPQLLTELSRKVIDMRELWRISSQGIPHSSALRSTLWKLFLRYLPPDRALWSSQLANKRSQYKHFKDDLLINPSEITRRMYNSTSYDTECASRLLLSRSQITHRDHPLSLDNTSIWNKFFQDSEIIDQIDRDVKRTHPDMHFFSSNSQIAKSNQEALRNILIIFAKLNPSIRYVQGMNEILAPLFYVFKNDPDVESAAFAEADTFFCFVELLDGFRDNFVQQLDNSVVGICSTIARLSQLLKEHDEELWRHLEVTTKVNPQFYAFRWITLLLTREFNFADILHIWDTLLSDPEGRQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRVQSV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1404 421 Pfam Rab-GTPase-TBC domain 104 385 IPR000195 -
Lan3g1404 421 SMART tbc_4 94 390 IPR000195 -
Lan3g1404 421 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 79 323 IPR035969 -
Lan3g1404 421 MobiDBLite consensus disorder prediction 1 74 - -
Lan3g1404 421 SUPERFAMILY Formin homology 2 domain (FH2 domain) 33 43 - -
Lan3g1404 421 Gene3D - 300 420 - -
Lan3g1404 421 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 4 419 - -
Lan3g1404 421 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 301 418 IPR035969 -
Lan3g1404 421 MobiDBLite consensus disorder prediction 26 47 - -
Lan3g1404 421 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 182 291 - -
Lan3g1404 421 ProSiteProfiles TBC/rab GAP domain profile. 99 364 IPR000195 -
Lan3g1404 421 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 4 419 - -
Lan3g1404 421 MobiDBLite consensus disorder prediction 56 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1404 Lan-Chr3 25699855 25703540 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1404 K24796 - gmx:100778830 593.964