Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1403 ATGATTATTATTATGATGTATGCTTCCACTGCATTTGTCTCTTCAATCCTTCTTCCCTCATCATCCTACTACTACCTTCTCCCATTCACTAAAACCACTTTTACTTGTAATCTTTCAAAATCTGTTTGGACAAGAACATCATCTTCATACAATAATAAACAACAACAACATCAACAACATCAACATCAACAACAACATCAACGTAGTAGAACACAACAACCTCCACACTTGGATCATGAAGTTGACATGGATGACCTTTTATCTTCCATCAGCGAAACCCAAAATGAACAACAACTCTTCGCTCTTCTCTCTCGTTACAGTGGAAGACAACTCTCCATTCGATTCATGGTTTCACTTCTCTCTCGTCAATCTGATTGGCAGCGCTCCCTCGCTATTCTTGATTGGATCAATCACAAGGCTCGTTATTCTCCTTCTCTCTTCGCTTTCAACGTTGTTATCAGGAATGTTCTCAGAGCTAAGCAGTGGCAACTCGCACACGGCCTGTTTGATGAAATGCGCCAATTGGGTCTTTCCCCTGATAGGTACACTTATTCTACCCTCATCACTTATTTTGGCAAACATGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAATGTGCCTGGTGACCTTGTCTTGTATTCTAATTTGATCGAGCTTTCACGAAAGTTGTGTGATTATTCTAAGGCCATTTCCATCTTCATGAGATTGAAAAGCTCTGGTATTACTCCTGACCTTGTAGCATATAACTCCATGATTAATGTATTTGGGAAAGCTAAGCTCTTCCGCGAGGCACGCCTTCTTCTTCACGAGATGAGGGAAAACGGTGTTCAACCTGACACGGTCAGCTACTCCACGCTTCTCACCATGTACGTTGAGAATCATAAGTTCGTGGAAGCGCTTTCTATGTTCTCTGAAATGAATGAAGGGAAGTGCTCACCTGATCTTACCACTTGTAATATCATGATTGATGTTTACGGCCAGCTTGACATGGCCAAGGAAGCCGACCGGCTGTTCTGGAGCATGAGGAAAATCGGGATTGAACCGAGCGTAGTTAGTTATAATACACTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGAGAAGCCATCCAACTGTTTCGTTTGATGCAAAAAAAGTCTATACAACAGAATGTGGTCACCTACAACACTATGATTAAGATTTATGGCAAGTCTCTTGAGCATGAAAAGGCAACAAATCTGATTCAAGAAATGCAGAATAGAGGTATTGAACCCAATTCCATCACATATTCGACAATAATATCGATATGGGAGAAGGCAGGGAAACTAGACAGGGCAGCCATGTTGTTTCAAAAGTTAAGGAGTTCAGGAGCTGAAATCGATCAGGTTCTTTACCAGACGATGATTGTAGCTTATGAAAGGGCAGGTTTAGTCGGTCATGCTAAGCGTCTACTTCAAGAGCTAAAGCAACCAGATAGCATTCCTAGGGAGACTGCCATCACGATTCTTGCTAGAGCCGGTAGAATTGAAGAGGCTACATGGGTTTTCCGACAGGCTTTTGATGCTGGAGAGATTAAAGATATTTCTGTGTTTAGCTGCATGATTGATCTTTTCTCGAGGAACAAAAAGTATGCAAATGTTGTGGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTAATGTTATTGCTCTCGTGTTGAATGCTTTCGGAAAGCTGAGAGAATTTGAGAAAGCAGATGCTTTATATGGACAGATGTATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTAAGTCTTTATGGTGCAAAAAAGGATTTCAAGATGGTAGAGTCGTTGTTTGAGAAGTTAGATTCCAATCCCAATATTAACAAGAAGGAGTTGCATCTTGTTGTTGCCAGCATATATGAAAGAGTAGATAGACTTAATGATTCTTCCCGAATCATGAACAGGATGAATCAAAGAGCGACTGGAAATCATGACCGCGCTTAG 2010 0.4124 MIIIMMYASTAFVSSILLPSSSYYYLLPFTKTTFTCNLSKSVWTRTSSSYNNKQQQHQQHQHQQQHQRSRTQQPPHLDHEVDMDDLLSSISETQNEQQLFALLSRYSGRQLSIRFMVSLLSRQSDWQRSLAILDWINHKARYSPSLFAFNVVIRNVLRAKQWQLAHGLFDEMRQLGLSPDRYTYSTLITYFGKHGLFDSSLFWLQQMEQDNVPGDLVLYSNLIELSRKLCDYSKAISIFMRLKSSGITPDLVAYNSMINVFGKAKLFREARLLLHEMRENGVQPDTVSYSTLLTMYVENHKFVEALSMFSEMNEGKCSPDLTTCNIMIDVYGQLDMAKEADRLFWSMRKIGIEPSVVSYNTLLRVYGEAELFGEAIQLFRLMQKKSIQQNVVTYNTMIKIYGKSLEHEKATNLIQEMQNRGIEPNSITYSTIISIWEKAGKLDRAAMLFQKLRSSGAEIDQVLYQTMIVAYERAGLVGHAKRLLQELKQPDSIPRETAITILARAGRIEEATWVFRQAFDAGEIKDISVFSCMIDLFSRNKKYANVVEVFEKMREVGYFPDSNVIALVLNAFGKLREFEKADALYGQMYEEGCVFPDEVHFQMLSLYGAKKDFKMVESLFEKLDSNPNINKKELHLVVASIYERVDRLNDSSRIMNRMNQRATGNHDRA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1403 669 MobiDBLite consensus disorder prediction 49 78 - -
Lan3g1403 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 37 662 - -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Lan3g1403 669 PANTHER OS03G0856100 PROTEIN 37 662 - -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Lan3g1403 669 Gene3D Tetratricopeptide repeat domain 63 227 IPR011990 GO:0005515
Lan3g1403 669 Pfam PPR repeat 323 352 IPR002885 -
Lan3g1403 669 Pfam PPR repeat 462 488 IPR002885 -
Lan3g1403 669 Pfam PPR repeat 529 557 IPR002885 -
Lan3g1403 669 Pfam PPR repeat 568 593 IPR002885 -
Lan3g1403 669 Pfam PPR repeat 357 386 IPR002885 -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Lan3g1403 669 MobiDBLite consensus disorder prediction 49 71 - -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Lan3g1403 669 Gene3D Tetratricopeptide repeat domain 492 669 IPR011990 GO:0005515
Lan3g1403 669 Gene3D Tetratricopeptide repeat domain 373 491 IPR011990 GO:0005515
Lan3g1403 669 Gene3D Tetratricopeptide repeat domain 228 372 IPR011990 GO:0005515
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Lan3g1403 669 SUPERFAMILY HCP-like 205 411 - -
Lan3g1403 669 Pfam PPR repeat family 144 189 IPR002885 -
Lan3g1403 669 Pfam PPR repeat family 249 296 IPR002885 -
Lan3g1403 669 Pfam PPR repeat family 390 433 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 323 355 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 568 597 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 182 213 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 529 561 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 252 286 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 357 389 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 148 180 IPR002885 -
Lan3g1403 669 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Lan3g1403 669 SUPERFAMILY TPR-like 428 567 IPR011990 GO:0005515
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Lan3g1403 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1403 Lan-Chr3 25695773 25698221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1403 119 625 Glycosyltransferase AT1G05670 22.285 1.31e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1403 - - jre:109008930 1018.07