Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan3g1394 | ATGAAGGGAGTGATAGTTAAGAACAAGAACGTTAGGGTTAGTGAAGAAGAAGAGGAAGAAGAGGAAGAAGAAGAAGACCACAATTCCGCACCTCGAAAGCTATATTTACATCATTCTGGTGATGATGGTTTCTATGATGTGGAAGCCATTCGCCGCAAGAGGATCCGCAAGGGTGAGGTCCAGTACCTTGTTAAATGGAAGGGATGGTCTGAGGGTGCAAACACTTGGGAGCCTCTCCACAATCTCCACTCTGTCTCTGATCTCATCCATTCTTTCGAACACAAACTTAAATCAGGGAAACTCGGTAACCGCAAGCGCAAACATCACCCTGTGCTTCAACAACCACCAAAGAAGAGGCCGCACCAACAGCAACGTGCTCCCACTTCTTACTGCCTTAGACATTTTGCAACTGATAACAACCATACACACTCTGCTCATCACACTATCAATCTTGTCAATGGAAAAGGAGATGCTGCTGCCCCTCTTGCTCAAGACAACCAACCAAATCAAAATGAAAGTAACAACGAGGAAAACATTGATGATCCAAAGCTTAGTGAGCTTAAGGCAACATCAAACAATGCCCTAGATGCTGCTGCAGATAAGCCAGAGGCTTCAACAGCCAACCCTCACATGGCCATGGAATCTGGCCCCTGCAGAGGAGCCAAAAGGAGAAAATCTGGTTCTGTGAAGAGGTTCAGGAGACAGGATGGTGATGACGATGATGATGCATCTAAGCCCAACCCAACCACCGTATCAGTTGAACAAGGCCAAAGAGGTGTGAACGGTGATGATGGTGGGAATAATAATAATAACAATGGTCACATGATGGGTGATGCGGCATCTGCCTTCCATATTGTAAAGATAATAAGACCGATAGGCTACGTGACTTCTTTTTCTAATATTGTAGATGATCTTTCAGTCATCTTTGTGGCCTTGAGGTCTGATGGAACAGAAGTAACCGTGACCAATAAGTATCTGAAGGCAAACAATCCACTTCTTCTGATCAATTACTATGAGGAGAATATCCGATACCATCCTATGTAG | 1044 | 0.4464 | MKGVIVKNKNVRVSEEEEEEEEEEEDHNSAPRKLYLHHSGDDGFYDVEAIRRKRIRKGEVQYLVKWKGWSEGANTWEPLHNLHSVSDLIHSFEHKLKSGKLGNRKRKHHPVLQQPPKKRPHQQQRAPTSYCLRHFATDNNHTHSAHHTINLVNGKGDAAAPLAQDNQPNQNESNNEENIDDPKLSELKATSNNALDAAADKPEASTANPHMAMESGPCRGAKRRKSGSVKRFRRQDGDDDDDASKPNPTTVSVEQGQRGVNGDDGGNNNNNNGHMMGDAASAFHIVKIIRPIGYVTSFSNIVDDLSVIFVALRSDGTEVTVTNKYLKANNPLLLINYYEENIRYHPM* | 348 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan3g1394 | 347 | SMART | chromo_7 | 44 | 97 | IPR000953 | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Lan3g1394 | 347 | ProSitePatterns | Chromo domain signature. | 62 | 82 | IPR023779 | - | |
| Lan3g1394 | 347 | ProSiteProfiles | Chromo and chromo shadow domain profile. | 45 | 104 | IPR000953 | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 198 | 273 | - | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 99 | 115 | - | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 158 | 181 | - | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 231 | 245 | - | - | |
| Lan3g1394 | 347 | Gene3D | - | 5 | 100 | - | - | |
| Lan3g1394 | 347 | CDD | CD_CSD | 45 | 93 | - | - | |
| Lan3g1394 | 347 | SUPERFAMILY | Chromo domain-like | 41 | 98 | IPR016197 | - | |
| Lan3g1394 | 347 | Coils | Coil | 6 | 26 | - | - | |
| Lan3g1394 | 347 | Pfam | Chromo (CHRromatin Organisation MOdifier) domain | 45 | 94 | IPR023780 | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 246 | 273 | - | - | |
| Lan3g1394 | 347 | MobiDBLite | consensus disorder prediction | 98 | 127 | - | - | |
| Lan3g1394 | 347 | PANTHER | CHROMO DOMAIN-CONTAINING PROTEIN LHP1 | 12 | 346 | IPR044251 | GO:0006325|GO:0031507 | |
| Lan3g1394 | 347 | SMART | ChS_2 | 274 | 347 | IPR008251 | GO:0005634 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan3g1394 | Lan-Chr3 | 25583785 | 25586135 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan3g1394 | - | - | lang:109344091 | 626.32 |