Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1140 ATGATGGCAGATCCCTACTACCCTTACGCTACTCCCGCACTCGCTGATTCTGACCCAGCAAGCATTGCCAGAACTAGCTTTGCTGGTTATATTCCATCCACTGCACCGTCATTATTGACTTCTCCTCATGCATCAAATAGGACTGAATTGCGTGGTGCCGGACCGGATTACCCGCAGAAAGATATGAATTTGTATCGGATGGGGGCGTATGGTGTTAATGATACGATTGGTTCTAGAGTTCATCATGAACCTGTTGTTGCAGCCGGGCATGATGTCAAGCATTATCCATCTCTTGATGATCGTGATCTTAGTAAAAATCGAGATAGTTCGTTAGGAGTTAGTCCAGGTGTTCCTGATATACATAGTGAAAGATTGATCACGAAAAGCAATCATGATGGTGTCTCGATTGCACCAAGGGATTCAAACGTTCTGTTTGTGGGTGGACTTCCAAAGGACTGCACTAGAAGGGAAGTTGGCCACCTTTTCCGTCCCTTTATTGGCTACAAAGATATCAAAGTTATCCACAGGGAGCCTAGACGAAGTGGAGACAAGGCCATGATTCTGTGCTTTGTGGAGTTCATTGACGCGAAATGTGCTCTCACTGCCATGGAAGCTCTGCAAGGCTACAAATTTGATGATAAAAAACCTGAGTTGTCGACCTTGAAAATCCAATTTGCACACTTTCCTTTCCGTCCACCTGATCATGATCAACAGCTTATGTCATAG 726 0.449 MMADPYYPYATPALADSDPASIARTSFAGYIPSTAPSLLTSPHASNRTELRGAGPDYPQKDMNLYRMGAYGVNDTIGSRVHHEPVVAAGHDVKHYPSLDDRDLSKNRDSSLGVSPGVPDIHSERLITKSNHDGVSIAPRDSNVLFVGGLPKDCTRREVGHLFRPFIGYKDIKVIHREPRRSGDKAMILCFVEFIDAKCALTAMEALQGYKFDDKKPELSTLKIQFAHFPFRPPDHDQQLMS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1140 241 MobiDBLite consensus disorder prediction 97 116 - -
Lan3g1140 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 233 - -
Lan3g1140 241 CDD RRM_RBPMS_like 142 224 - -
Lan3g1140 241 PANTHER PROTEIN COUCH POTATO 13 233 - -
Lan3g1140 241 Gene3D - 137 228 IPR012677 -
Lan3g1140 241 SUPERFAMILY RNA-binding domain, RBD 99 215 IPR035979 GO:0003676
Lan3g1140 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 228 IPR000504 GO:0003723
Lan3g1140 241 SMART rrm1_1 143 219 IPR000504 GO:0003723
Lan3g1140 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 215 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1140 Lan-Chr3 23724334 23727298 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1140 - - lang:109343815 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1140 3 23724334 23727298 Lan3g1140 3 23724334 23727298 ECH