Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1092 ATGGGTTCTCTCTCACTTCTCAAACCTTCATTCTTCTTCTCGCATCGACCATTTCTCAAACCCTCTCCCATCTTCTTCAGAACAACCAAACCCCGTTCATTCAACACCACTTCTCTCGGCACATCTCACCCGTTAAAAACTGCCCAAAACAACATTTCCAAATCCAACGGTGAAACTCATAGCGACAGTTTCACTTCAGGGTTGAAGAATCTTTCGTCAGTGTGGTTTTACAATACCATGAGTAAAAAGAAGGAATCTTTCAAACCCAAACTTGATTCCAAAGTGGGAATGTATGTTTGTGGTGTCACTGCTTATGATCTTAGTCACATTGGACATGCTCGTGTTTATGTCAATTTTGACCTTCTTTTCAGATATTTTAAGCATTTGGGATATGAAGTGTGTTATGTTCGCAATTTTACTGATGTAGACGACAAGATAATTGCTAGAGCAAAGGAGGTAGGAGAAGATCCAATCAGTTTGAGCCGACGCTATTGTGAGGAGTTCTGTCAAGACATGGTTACTCTGAATTGTCTGCCTCCTTCCGTGGAACCTAAAGTCTCAGACCACATGCCTCAGATTATTGATATGATTGACAAGATTCTTAGTAATGGATATGCCTACGTTGTTGATGGGGATGTATACTTTAATGTAGAAAACTTTCCAGAATATGGGAAATTATCTGGTCGTGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAACATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAGCCTTTTTGGGAGAGTCCTTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCTTATCTTGGTTACTCTTTCGACATCCATGGTGGAGGGATTGATCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGCGCTGCGTGTAAAAAAAGTGATATAAGCCTATGGATGCACAATGGATTTGTCACTATTGACAATGAGAAGATGTCTAAATCTCTGGGAAACTTTTTTACAATACGGCAGGTTGTAGACCTTTACCACCCACTAGCTTTGAGATACTTTTTGATGGGGGCCCATTATCGATCTCCAATTAACTATTCTGACATACAGCTTGAAAGTGCTTCAGACCGTGTTTTCTATATATACGAGACATTACATGAATGTGAAAGCTTTCTGATTGAGCAAGACCAGGCAGTTAGGAAGGATTCCATCCCACCGGATACACTGAGCATTATTGATAACTTCCAGAATGTTTTCCTGACCTCAATGTCTGATGATCTTCACACGCCCGTTGTATTGGCTGGACTGTCTGAACCTTTAAAATCAATTAATGATTTGCTGCATACTCGTACGGGGAAAAAACAAAAATTTCGGGTAGAATCACTTGCAGCCTTGGAGAAAAGCATCAGGAATGTCCTGACTATTTTAGGACTTATGCCTTCAAGATATTCCGAGGTTTTGCAGCAGCTTAAGGAAAAGGCTTTAAAGCGTGCAAAGTTGACAGAAGATGAAGTATTAAGGAAAATTGAAGAAAGAGCTTATGCTAGAATACAAAAAGAGTATGCTAAATCAGATGCAATAAGAAAGGATTTGGCTGTTGTTGGTATTACTCTTATGGATAGTCCCAATGGCACTACTTGGAGGCCTGCCATTCCTCTTCCCCTTCAAGAGCACCATGGTGATGCTCTTTGA 1719 0.4107 MGSLSLLKPSFFFSHRPFLKPSPIFFRTTKPRSFNTTSLGTSHPLKTAQNNISKSNGETHSDSFTSGLKNLSSVWFYNTMSKKKESFKPKLDSKVGMYVCGVTAYDLSHIGHARVYVNFDLLFRYFKHLGYEVCYVRNFTDVDDKIIARAKEVGEDPISLSRRYCEEFCQDMVTLNCLPPSVEPKVSDHMPQIIDMIDKILSNGYAYVVDGDVYFNVENFPEYGKLSGRDLEDNRAGERVAVDSRKKHPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISLWMHNGFVTIDNEKMSKSLGNFFTIRQVVDLYHPLALRYFLMGAHYRSPINYSDIQLESASDRVFYIYETLHECESFLIEQDQAVRKDSIPPDTLSIIDNFQNVFLTSMSDDLHTPVVLAGLSEPLKSINDLLHTRTGKKQKFRVESLAALEKSIRNVLTILGLMPSRYSEVLQQLKEKALKRAKLTEDEVLRKIEERAYARIQKEYAKSDAIRKDLAVVGITLMDSPNGTTWRPAIPLPLQEHHGDAL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1092 572 SUPERFAMILY Nucleotidylyl transferase 76 382 - -
Lan3g1092 572 CDD CysRS_core 75 376 IPR032678 -
Lan3g1092 572 Hamap Cysteine--tRNA ligase [cysS]. 74 559 IPR015803 GO:0004817|GO:0005524|GO:0006423
Lan3g1092 572 Pfam tRNA synthetases class I (C) catalytic domain 89 383 IPR032678 -
Lan3g1092 572 PRINTS Cysteinyl-tRNA synthetase signature 97 108 IPR024909 -
Lan3g1092 572 PRINTS Cysteinyl-tRNA synthetase signature 133 142 IPR024909 -
Lan3g1092 572 PRINTS Cysteinyl-tRNA synthetase signature 262 280 IPR024909 -
Lan3g1092 572 PRINTS Cysteinyl-tRNA synthetase signature 293 314 IPR024909 -
Lan3g1092 572 PANTHER CYSTEINYL-TRNA SYNTHETASE 73 566 IPR024909 -
Lan3g1092 572 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 73 566 - -
Lan3g1092 572 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 414 557 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan3g1092 572 Gene3D HUPs 58 374 IPR014729 -
Lan3g1092 572 MobiDBLite consensus disorder prediction 35 62 - -
Lan3g1092 572 Gene3D - 375 558 - -
Lan3g1092 572 TIGRFAM cysS: cysteine--tRNA ligase 76 557 IPR015803 GO:0004817|GO:0005524|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1092 Lan-Chr3 23287957 23292232 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1092 K01883 - gmx:100786700 934.095