Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1056 ATGGGTACTGCAACATACCCATTTGGAACTCATCTCTTTCATTCACACTCTTATGCTTTCAAATTTCATTACTCAACCTTCTCCCATTTCCACCTTTCATCAATTACCTTCTTCCATCGTTCTCCTTCCAAGCGAGTAATTGATCGAATATGTGCACGGCCTGATATTGATGATTTCTTCTGGGAGAAAGTTCCAACGCCCATTCTCGACATGGTTGAAAACCCTCTTTTCTTGAAGAACTTATCTCTTAAGGAACTGAAACAACTAGCTTTTGAAATCCGCTTAGAATTGTGTTCTATTATGTCAGGTACAGAGTTATTATTGAAACCAAGTATGGCAGTGGCGGAGCTGACAGTTGCAATACACCATGTTTTTCATGCTCCAGTAGACAAGATACTGTGGGATGTTGGTGATCAAACATATGCGCACAAGATTCTTACAGGAAGGCGATCCCTCATGAAGACAGTGAGACAAAAGAATGGCCTTTCTGGTTTTACTTCTCGATATGAGAGTGAATATGATGCATTTGGAGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTTGCACGTGATATGAAGGGGAGGCGAGAACGTGTAGTTGCAGTTATCAGCAATTTGACGACTATGTCTGGGCAGGTTTATGAAGCGATGAGCAATGCAGGATATTTGGACTCAAATATGATCGTGATTTTGAATGACAGCCGCCACTCTTTACTCCCAAAAGTTGAGGAGGGCCCAAAGACATCTGTGAATGCCTTGTCTAGTACCCTAAGAAAGCTCCAATCCAGCAAATCTTTCCGAAGATTTAGAGAAGCTGCGAAGGGTGTTACAAAACGAATTGGTAGAAGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCTCGTGGGATGATGGGTCCACTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATTGGCCCGGTGGATGGGCACAATATCGATGATCTAATTTCTGTTCTCCAAGAAGTAGCTTCCCTTGATTCAATGGGTCCCGTCTTAATTCACGTGATAACCAATGAAAATAAGGAAGAAGAAAACAGTCAGAGAAGTGATATAACAGACTGGCTGCAGGATGATTCTATTAAATCTGACTTGTTACATTATGCTGTTCGCCCTCGTACATATGGTGATTGCTTTGTGGAGGCTTTGGTTGCAGAAGCGGAGAAAGACAAAGATGTTGTGGTTGTTCATGCAGGAGGTACGATGGAGCCGGCACTTGAACTGTTCCGGGAAAAATTTCCAGATAGGTTTTTTGATGTGGGAACGGCTGAGCAACATGCAGTTACATTTGCTTCGGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCTTATGACCAGGTGGTCCACGATGTTGATCAACAGAAAACTCCAGTTCGGTTTGTGATTACAAGTGCGGGATTGGTTGGTTCTGATGGTCCCCTCCAATGCGGAGCATTTGATATAACCTTTATGTCATGCTTGCCAAACATGATTGTCATGGCACCATCAGATGAGGTTGAACTCGTGAACATGGTGAGTACTGCTGCTCGTGTCAATGATCGGCCAGTTTGCTTTAGGTATCCAAGGGGTGCCCTGGTTAGGAAAGAGCACACTACATCTGATGGAATCCCCATTAAGATTGGGAAAGGAAGAGTCCTTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAATTGCCTTAAGGCTCATACACTCCTTGCAGAGCTTGGGGTTGAGGTGACCGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGACAGCTTTGTAAACACCATTCTTTCCTGATTACTGTAGAGGAAGGATCTATTGGAGGATTTGGTTCTCATGTTGCTCAGTTTATTGCACTTGATGGACTGCTTGATGGAGGGATTAAGTGGCGACCGATTGTGTTACCGGACAATTATATCGAGCATGCATCACCAAAGGAGCAGCTTGACCAGGCAGGGTTAACTGGACATCATATTGCTGCCACGGCATTGAGTTTGCTGGGTCGGACTCGCGAAGCACTCCAATTTATGTGTTCGTAA 2130 0.439 MGTATYPFGTHLFHSHSYAFKFHYSTFSHFHLSSITFFHRSPSKRVIDRICARPDIDDFFWEKVPTPILDMVENPLFLKNLSLKELKQLAFEIRLELCSIMSGTELLLKPSMAVAELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTVRQKNGLSGFTSRYESEYDAFGAGHGCNSISAGLGMAVARDMKGRRERVVAVISNLTTMSGQVYEAMSNAGYLDSNMIVILNDSRHSLLPKVEEGPKTSVNALSSTLRKLQSSKSFRRFREAAKGVTKRIGRSMHEWAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIDDLISVLQEVASLDSMGPVLIHVITNENKEEENSQRSDITDWLQDDSIKSDLLHYAVRPRTYGDCFVEALVAEAEKDKDVVVVHAGGTMEPALELFREKFPDRFFDVGTAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKTPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELVNMVSTAARVNDRPVCFRYPRGALVRKEHTTSDGIPIKIGKGRVLVEGKDVALLGYGSMVQNCLKAHTLLAELGVEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGGIKWRPIVLPDNYIEHASPKEQLDQAGLTGHHIAATALSLLGRTREALQFMCS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1056 709 Gene3D - 61 359 - -
Lan3g1056 709 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 32 708 - -
Lan3g1056 709 Pfam Transketolase, pyrimidine binding domain 389 550 IPR005475 -
Lan3g1056 709 Pfam Transketolase, C-terminal domain 566 689 IPR033248 -
Lan3g1056 709 SMART Transket_pyr_3 388 553 IPR005475 -
Lan3g1056 709 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 698 IPR005477 GO:0008661|GO:0016114
Lan3g1056 709 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 353 IPR005477 GO:0008661|GO:0016114
Lan3g1056 709 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 71 695 IPR005477 GO:0008661|GO:0016114
Lan3g1056 709 Gene3D - 566 697 IPR009014 GO:0003824
Lan3g1056 709 Gene3D - 388 562 - -
Lan3g1056 709 SUPERFAMILY TK C-terminal domain-like 561 697 IPR009014 GO:0003824
Lan3g1056 709 CDD TPP_PYR_DXS_TK_like 394 547 - -
Lan3g1056 709 CDD TPP_DXS 108 357 IPR005477 GO:0008661|GO:0016114
Lan3g1056 709 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 32 708 IPR005477 GO:0008661|GO:0016114
Lan3g1056 709 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 387 576 IPR029061 -
Lan3g1056 709 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 449 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1056 Lan-Chr3 22859816 22866068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1056 431 648 Acyl Lipid Metabolism Gene Families AT3G13450 25.641 1.89e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1056 K01662 - gmx:100793268 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1056 3 22859816 22866068 Lan3g1056 3 22859816 22866068 ECH