Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1016 ATGCCTTCCCTTCAGCTGCTGCAACTAACTCAGCATGGCCAGAGTTTTCTGGCTTCAAGGAGGAAAACTTTACTACTTGCAACTGGTATCTTAGCTGCTGGTGGAGCAGCTGCATATATGCAATCTAGGTTTAGAGTTAATAAACATGATTTGTTAGGCCATTGCAATGGGCACAACAATGATAAAGAAGTCGCAAAGGATGAGGTTGTGAAGGATGCTGCTGATTCAAAAAATAAACAAAAGAAAGGGGGTTTGAAGTCCCTTCAAGTCCTTGCTGCAGTTCTTCTATCTGAGATGGGCCAATTAGGTGCAAGGGACCTTTTAGCTTTAGTTGGCATAGTGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCAAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGCGTGCCATTGTTTTTCCGGTTAATATCAGAAAATATTATTTTGTGCTTCTTCTTATCAACCATTCACTCTACGTCAAAGTACATAACTGGGACTTTGAGTCTGCATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATGTCACATGTTGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTACCAAGGTTCTGTTCGGAGTTGAGTGAAATTGTACAGGATGATTTAACAGCAGTAGCTGATGCAGTTCTATACACTTGGCGGCTGTGTTCATATGCTAGCCCGAAATATGTCTTCTGGATATTGGCCTATGTACTTGGAGCTGGTACCGTGATGAGAAACTTCTCTCCCTCATTTGGGAAACTTATGTCCAGAGAGCAGCAATTGGAAGGAGAGTATAGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATATTACGGTGGAGAGAGGAGAGAAGAATCTCATATTCAACAGAAGTTTAAGACCTTGGTTAGGCACATGAAAATTGTGCTTCATGACCAATGGTGGTTTGGCATGATTCAAGACTTATTATTGAAGTACCTGGGTGCTACTGTTGCTGTTATTTTGATAATCGAGCCTTTCTTTTCTGGCCATCTAAAGCCTGACAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACTAGCGTCATTGTTTCTCTATTTCAGTCTCTAGGAACCCTTTCTATCAGTGCAAGACGGCTCAGTCGTCTCAGTGGGTATGCCGATCGCATTTATGAGTTAATGTCTGTATCAAGGGAGCTAAGCTTAGTGGATGAGAATCCTTCACTGCAAAGAAAAGGGAGTAGAAATTGCACAAGTGAAGCTAACTATATTGAATTTTCTGGAGTCAAGGTTGTGACCCCCACTGGTAATGTCTTGGTGGATGATCTGACCCTTAAGGTTGAGCCAGGCTCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGTGTTCTAGGTGGTCTTTGGCCATTGATATCTGGATATATTGTGAAACCTGGCATTGGCTCTGATCTTAACAAGGAGATTTTCTATGTACCACAAAGACCATACACTGCTGTAGGAACCCTTCGTGATCAGCTAATTTATCCTCTTACTTCAGATCAAGAGGTTGAACCACTCACAGATAGCGGGATGGTGGAACTATTGAAAAATGTTGACCTTGAATATTTGCTGGACCGTTACCCGTCTGAGAAGGAGGTAAATTGGGGTGAAGAACTTTCGTTGGGTGAGCAACAGAGGTTGGGCATGGCTAGACTTTTCTACCATAAGCCTAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTAACTACTGATATGGAAGAGCGGTTTTGTGCTAAAGTTCGGGACATGGGAACATCATGCATTACCATCTCACATCGTCCAGCATTAGTGGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATGGAAGGGAGGACTCTTCTACTGAAATGGGGATTGATAAGATGAAGACATTAGAGACAACTCGACAGAGTGATGCCAAGGCAGTTCAACGAGCATTTGCCATCAACAAAAAGGATTCTGCATTCTCAAATTCAAAGGCACAATCATATATTGCAGAAGTGGTAGCGTCATCTCCATCTATGAATCAGTCTATTTCATCATCTGTTGTTCCCCAAATCCGTGGTAACAAAAGGGTATTGCCATTTAGGGTTGCTGCCATGTCTAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCTCAACTGCTTGCTGTTGTTTTTCTTGTTGTTTCAAGAACATGGGTCTCGGATCGTATTGCATCACTTAATGGTACCTCTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTGCCTTTATTCGGTTAATTGGTCTAAGCGTTCTGCAAAGTGCTGCCTCTTCTTTTATTGCACCTTCTATAAGACACTTGACTGCCAGGCTAGCCCTCGGGTGGCGGATTCGTTTGACACAGCATCTACTCAAAAACTACTTGAGAAACAATGCATTCTACAAGGTCTTCAACATGTCGAGCAAGAATATTGACGCTGATCAGAGGCTAACTCAGGATTTGGAGAAGTTAACAACTGACTTGTCTGGACTGGTCACTGGATTAGTAAAGCCTTCTGTGGATATCTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCCATACTCTATACTTACATGTTACTTGGTCTCGGATTTCTTAGAACTGTTACTCCTGATTTTGGTGATTTAATAAGCCAGGAACAAGAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTATGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCCCGAGAAAAAGCTATGGTTGAATCAAGATTCGGAGAGCTTCTCACCCACTCCAAGTATCTTCTAAAAAAGAAGTGGGTGTTCGGTATACTGGATGATTTTATTACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTTAGCTTGTTGTATGCCATGGAACATCAGGGAGACCGTGCATCAATAAGTACACAGGGTGAGCTGGCACATGCACTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGTGATATTCTTGAATTGAATAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATCGGATTTTTGAGTTTGAAGAATTCCTGGAAGCAGCACAGTCTGGGAATTTCATCAGTGATGGAGATACACTTCCAGAGAGGGATTTTCGTTCCAAAGATGTTATTTCTTTTTCCAAGGTTGATATTGTAACCCCTACTCAGAAGATGTTGGCCAGGGAGTTAACATGTGACATTCAGCTTGGAGGAAGCCTGCTCGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTCAGAGGACTTTGGCCAGTTGCAAGTGGAAGACTCTCTAGACCGTCTGAAGATCTCACTCAAGAAGCTGGGTCGGGTTGTGGCATTTTCTATGTCCCTCAGCGGCCCTATACATGCTTGGGTACCCTGCGGGATCAAATTATATACCCCCTGTCCCGTGAGGAAGCAGAGTTTAGGGCATTGAAGATGTATGGAAAAGGTGAAGTACATCCTGACACTGGAAATTTGTTGGACATGCGCTTGGAAGTTATTCTAGAGAATGTTCGGTTGATTTATCTTTTAGAAAGGGATGAAAGAGGCTGGGATGCAATTCTAAACTGGGAAGACATTCTTTCTCTTGGGGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTTCCACGAGCCTAAATTTGGTATCCTGGACGAGTGCACGAATGCAACTAGCGTTGATGTTGAAGAACACTTATATGGGGTTGCAAAGGATTTGGGAATCACATTTATTACTTCCTCACAACGTCCCGCTTTAATACCATTCCATTCCTTGGAATTACGGCTGATTGATGGCGAGGGCAATTGGGAGCTTCGAAAAATCGAGCAATGA 4014 0.4258 MPSLQLLQLTQHGQSFLASRRKTLLLATGILAAGGAAAYMQSRFRVNKHDLLGHCNGHNNDKEVAKDEVVKDAADSKNKQKKGGLKSLQVLAAVLLSEMGQLGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENIILCFFLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKMSHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVADAVLYTWRLCSYASPKYVFWILAYVLGAGTVMRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAYYGGERREESHIQQKFKTLVRHMKIVLHDQWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLKPDSSTLGRAEMLSNLRYHTSVIVSLFQSLGTLSISARRLSRLSGYADRIYELMSVSRELSLVDENPSLQRKGSRNCTSEANYIEFSGVKVVTPTGNVLVDDLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLISGYIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTDSGMVELLKNVDLEYLLDRYPSEKEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRDMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYGREDSSTEMGIDKMKTLETTRQSDAKAVQRAFAINKKDSAFSNSKAQSYIAEVVASSPSMNQSISSSVVPQIRGNKRVLPFRVAAMSKVLVPTVLDKQGAQLLAVVFLVVSRTWVSDRIASLNGTSVKFVLEQDKAAFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFNMSSKNIDADQRLTQDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYTYMLLGLGFLRTVTPDFGDLISQEQELEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFGELLTHSKYLLKKKWVFGILDDFITKQLPHNVTWLLSLLYAMEHQGDRASISTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFEFEEFLEAAQSGNFISDGDTLPERDFRSKDVISFSKVDIVTPTQKMLARELTCDIQLGGSLLVTGPNGSGKSSIFRVLRGLWPVASGRLSRPSEDLTQEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEFRALKMYGKGEVHPDTGNLLDMRLEVILENVRLIYLLERDERGWDAILNWEDILSLGEQQRLGMARLFFHEPKFGILDECTNATSVDVEEHLYGVAKDLGITFITSSQRPALIPFHSLELRLIDGEGNWELRKIEQ* 1338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1016 1337 Gene3D - 1093 1327 IPR027417 -
Lan3g1016 1337 CDD ABCD_peroxisomal_ALDP 1099 1330 - -
Lan3g1016 1337 Gene3D - 433 711 IPR027417 -
Lan3g1016 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 447 678 IPR003439 GO:0005524
Lan3g1016 1337 Gene3D ABC transporter type 1, transmembrane domain 104 418 IPR036640 GO:0005524|GO:0016021
Lan3g1016 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1095 1326 IPR027417 -
Lan3g1016 1337 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 592 1337 - -
Lan3g1016 1337 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 76 597 - -
Lan3g1016 1337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 651 IPR027417 -
Lan3g1016 1337 Pfam ABC transporter transmembrane region 2 746 1011 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g1016 1337 Pfam ABC transporter transmembrane region 2 91 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g1016 1337 Pfam ABC transporter 1117 1283 IPR003439 GO:0005524
Lan3g1016 1337 Pfam ABC transporter 464 609 IPR003439 GO:0005524
Lan3g1016 1337 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524
Lan3g1016 1337 CDD ABCD_peroxisomal_ALDP 447 655 - -
Lan3g1016 1337 SUPERFAMILY ABC transporter transmembrane region 143 418 IPR036640 GO:0005524|GO:0016021
Lan3g1016 1337 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1093 1335 IPR003439 GO:0005524
Lan3g1016 1337 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 76 597 - -
Lan3g1016 1337 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 592 1337 - -
Lan3g1016 1337 SMART AAA_5 1124 1336 IPR003593 -
Lan3g1016 1337 SMART AAA_5 472 651 IPR003593 -
Lan3g1016 1337 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 151 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g1016 1337 SUPERFAMILY ABC transporter transmembrane region 761 1069 IPR036640 GO:0005524|GO:0016021
Lan3g1016 1337 ProSitePatterns ABC transporters family signature. 1255 1269 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1016 Lan-Chr3 22377786 22394739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1016 1 1337 Acyl Lipid Metabolism Gene Families AT4G39850 77.330 0.0 2117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1016 K25819 - gmx:100813765 2310.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0065 15 403319 413842 Lan3g1016 3 22377786 22394739 LSH
Lan14g0192 14 2318640 2332460 Lan3g1016 3 22377786 22394739 LSH