Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0599 ATGGATCAAGGAGAACTTGGACGAATTTTTCAAATGTTTGATCGAAATGGGGATGGTAGGATTACAAAAAAAGAGCTTAGTGACTCTCTAAAAAATCTTGGCATATGCATTTCAGAACATGATTTGATCCAAATGATTGAAAAAATTGATGTAAATGGAGATGGGTATGTTGACATAGATGAATTTGGTGAGTTATACCAAACAATAATGGATGAGAAAGATGAAGATGAAGACATGAAGGAAGCATTCAATGTATTTGATCAAAATGGTGATGGGTTCATTACAGGAGAAGAATTAAGTGAAGTGTTATCTTCTTTGGGATTAAAATATGGTAAGACAATAGAAGATTGCAAAAACATGATCAAGAAAGTGGATGTGGATGGTGATGGAATGGTTAGTTTCAAAGAATTTAAGCAAATGATGAAAGCTGGTGGATTTGCTGCAGCTTCATTAAGTTGA 459 0.3377 MDQGELGRIFQMFDRNGDGRITKKELSDSLKNLGICISEHDLIQMIEKIDVNGDGYVDIDEFGELYQTIMDEKDEDEDMKEAFNVFDQNGDGFITGEELSEVLSSLGLKYGKTIEDCKNMIKKVDVDGDGMVSFKEFKQMMKAGGFAAASLS* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0599 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Lan3g0599 152 Gene3D - 2 76 - -
Lan3g0599 152 SUPERFAMILY EF-hand 5 141 IPR011992 -
Lan3g0599 152 SMART efh_1 116 144 IPR002048 GO:0005509
Lan3g0599 152 SMART efh_1 5 33 IPR002048 GO:0005509
Lan3g0599 152 SMART efh_1 41 69 IPR002048 GO:0005509
Lan3g0599 152 SMART efh_1 78 106 IPR002048 GO:0005509
Lan3g0599 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Lan3g0599 152 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 151 - -
Lan3g0599 152 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Lan3g0599 152 Pfam EF-hand domain pair 77 142 IPR002048 GO:0005509
Lan3g0599 152 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Lan3g0599 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 151 - -
Lan3g0599 152 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lan3g0599 152 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Lan3g0599 152 Gene3D - 77 143 - -
Lan3g0599 152 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Lan3g0599 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Lan3g0599 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Lan3g0599 152 PRINTS Parvalbumin signature 65 83 - -
Lan3g0599 152 PRINTS Parvalbumin signature 87 103 - -
Lan3g0599 152 PRINTS Parvalbumin signature 124 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0599 Lan-Chr3 7036015 7036849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0599 1 148 EF-hand Containing Proteins AT3G07490 79.730 2.20e-74 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0599 K13448 - gmx:100806637 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0851 10 12561395 12562371 Lan3g0599 3 7036015 7036849 LSH