Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0557 ATGGCTTGGAGACCCTTCATAACACAGGTTGCTAGGCGTCAATCCGAATTTGGTCTGGTCAAAAGTTTGTTTGTTAGAAGCTATTTTTCTGTCAATAAGTTTGGAGACCGTGCAGGGAATAGACTTTTGTGCGCACAAGAGAGATTCCAGTCAAGCTACATTAGCAATTTAGCTCGTCGAGTACGGGATGCAGATGAAGCCAGCGAAGTTGCTCATCTTAAAGAACTATACTATCGCAATGATCCTGAAGCGGTGATTAAATTATTTGAAAGTCAGTCATCTCTGCATTCTAATCCTTCGGCACTTTCTGAATACGTTAAAGCATTAGTCAAAGTTGATAGGCTGGATGAAAGTGAATTACTGAAGACATTGCAGAAAGGTGTTTCCAATTCCCTGAGGGAGGAACAAAGTATAGGTGGACTTACTGCTTTTAGAAATGTGGCGAAGTCTGCAAATGACAGAGCTCTTGGAACTGCAAGTTCCCCAATTCATATGGTGGCTACAGAAGTTGGGAGTTTTAAAGATCAGTTATGGCGTACAGTTAGGTCCCTTGCCGTGGTTTTTTTATTGATTTCTGGTGTAGGAGCACTCATTGAGGATAAAGGAATCAGTAAAGGACTTGGCATGAATGAAGGAGTACAACCCATCATGGAGACAAATACAAAATTTAGTGATGTAAAAGGTGTTGATGAGGCAAAGGCTGAGCTGGAAGAAATTGTTCATTACCTCCGAGATCCGAAGCGCTTTACTCGTCTTGGTGGTAAGCTCCCAAAAGGAGTTTTGCTTGTTGGGCCGCCTGGCACTGGAAAAACAATGCTGGCAAGAGCTATAGCTGGAGAGGCGGGGGTTCCTTTTTTCTCATGCAGTGGTAGTGAATTTGAAGAGATGTATGTTGGTGTTGGAGCACGAAGGGTGAGAGATCTTTTTTCTGCTGCAAAGAAGAGATCCCCTTCTATAATCTTTATTGATGAGATTGATGCTATTGGAGGAACCCGTAATCCGAAGGACCAAATGTACATGAAGATGACATTAAATCAGTTGCTGGTTGAGCTAGATGGATTCAAACAGAATGAAGGGATAATTGTGATTGCAGCTACTAATTTTCCCGAGTCATTGGATAAGGCTTTGGTGAGACCTGGACGATTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAAGGAAGGCGGCAGATTTTGGAATCATACATGACAAAGGTTTTAAAAGGTGGTGATGTTGATCTAATGATCATTGCTCGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGGTTAATGTTGCTGCTCTCAAGGCTGCAATCGATGGTGCCAAAACTGTGAGCATGGCTGATTTAGAACATGCTAAGGACAAGATCTTAATGGGAAGCGAACGCAAGTCAGCTGTCATATCCAAAGAGTCACGAAAGTTGACTGCTTTCCATGAGGGTGGCCATGCCCTTGTGGCCATTCATACTGATGGGGCCCTTCCTGTTCACAAGGCAACAATAGTCCCCCGGGGGATGGCTCTTGGCATGGTTACCCAATTACCTGACAAGGACGAGACCAGTATGTCCCGTAAACACATGCTTGCCCGGCTTGATGTTTGCATGGGAGGCCGTGTTGCTGAAGAGCTAATTTTTGGAGAAAATGAAGTCACTTCCGGCGCATCATCCGATCTTAAGCAGGCAACTAGTCTAGCAAGGGAAATGGTTACTAAATATGGTATGGGCAATGAAGTTGGACTTGCCACTCATAATTACAATGACGATGGGAAAAGCATGAGCTCAGAGACTAGGCTTCTTATTGAGAAAGAAGTGAAGCACTTCCTTGAGAGGGCTTACCATAATGCAAAAACTATTCTAACCACTCACAAAAAGGAGCTTTATGCACTTGCAAATGCTCTGTTGGAGCATGAGACTCTTACAGGAAATCAGATAAAGGCATTGCTTGCCCAAGTTAGATCTCAGAAGCAACAGCAGTCACATGTAGTTGAAGCACAGAGCAGTTCACAATCCAATACACCACCTCCAACTTCAAACCCCGCAGCATCAGCTGCTACTGCAGCAGCAGCCGCCGCAGCTGCAGCCACTGCTGCCGCCAAGGGTGCTGCTGCCAAGGCTCAAGGTGTTCAAGTGTGA 2145 0.448 MAWRPFITQVARRQSEFGLVKSLFVRSYFSVNKFGDRAGNRLLCAQERFQSSYISNLARRVRDADEASEVAHLKELYYRNDPEAVIKLFESQSSLHSNPSALSEYVKALVKVDRLDESELLKTLQKGVSNSLREEQSIGGLTAFRNVAKSANDRALGTASSPIHMVATEVGSFKDQLWRTVRSLAVVFLLISGVGALIEDKGISKGLGMNEGVQPIMETNTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMYVGVGARRVRDLFSAAKKRSPSIIFIDEIDAIGGTRNPKDQMYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESYMTKVLKGGDVDLMIIARGTPGFSGADLANLVNVAALKAAIDGAKTVSMADLEHAKDKILMGSERKSAVISKESRKLTAFHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQLPDKDETSMSRKHMLARLDVCMGGRVAEELIFGENEVTSGASSDLKQATSLAREMVTKYGMGNEVGLATHNYNDDGKSMSSETRLLIEKEVKHFLERAYHNAKTILTTHKKELYALANALLEHETLTGNQIKALLAQVRSQKQQQSHVVEAQSSSQSNTPPPTSNPAASAATAAAAAAAAATAAAKGAAAKAQGVQV* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0557 714 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 264 283 - -
Lan3g0557 714 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 678 697 - -
Lan3g0557 714 MobiDBLite consensus disorder prediction 662 687 - -
Lan3g0557 714 Gene3D - 391 464 - -
Lan3g0557 714 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 8 686 - -
Lan3g0557 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 484 IPR027417 -
Lan3g0557 714 Pfam Peptidase family M41 471 650 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan3g0557 714 CDD AAA 257 389 - -
Lan3g0557 714 Pfam ATPase family associated with various cellular activities (AAA) 260 389 IPR003959 GO:0005524|GO:0016887
Lan3g0557 714 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 682 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan3g0557 714 SMART AAA_5 256 392 IPR003593 -
Lan3g0557 714 Gene3D Peptidase M41 465 664 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan3g0557 714 Gene3D - 209 390 IPR027417 -
Lan3g0557 714 Pfam AAA+ lid domain 412 455 IPR041569 -
Lan3g0557 714 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 218 652 IPR005936 GO:0004176|GO:0004222|GO:0016020
Lan3g0557 714 PANTHER METALLOPROTEASE M41 FTSH 8 686 - -
Lan3g0557 714 SUPERFAMILY FtsH protease domain-like 471 655 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lan3g0557 714 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0557 Lan-Chr3 5936220 5942908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0557 65 652 Miscellaneous Gene Families AT5G53170 52.365 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0557 K08955 - jre:109020493 1085.48