Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0437 ATGCACGCTCCGGTTTTAGTTCTAAAGGACTCTTTGAAGCGTGAGTCTGGAACCAAGGTGCACCATGCAAACATTCAAGCATCTAAGGCTGTTGCTGACATAATCCGTACAACATTGGGACCCAGGTCCATGCTAAAGATGCTACTTGATGCTTCGGGAGGAATTGTGGTGACTAATGATGGGAATGCTATCTTACGTGAATTAGATATTGCTCACCCAGCTGCCAAGTCTATGATTGAACTAAGTCGAACCCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATTATTCTTGCTGGTGAGATGCTCCATGTTGCTGAAGCATTCATTGAGAAAAGCTATCATCCTACAGTCATTTGCCGAGCTTATAACAAAGCCCTTGAGGATGCTATTGCCGTTCTTGACAAAATTGCAATGGCCATTGATCCCCAGGATAGAGCTACAATGCTTGGGCTAGTAAAAAGCTGCATAGGTACCAAATTCACTAGTCAATTTGGTGATTTAATTGCTGATTTGGCTATCGATGCTACTACAACAGTAGGTGCTGATATTGGCCAAGGTTTAAGAGATGTAGATATTAAAAATTATATTAAGGTTGAGAAGGTCCCTGGTGGGCAGTTGGAGGACTCGAGAGTTCTTAAGGGTGTTATGTTTAACAAAGATGTGGTTGCCCCTGGCAAAATGAGGAGAAAGATTGTTAACCCACGTATCATTCTTCTTGATTCTCCTCTCGAGTATAAAAAGGGTGAAAACCAAACAAATGCTGAACTGCTCAAAGAAGAAGACTGGAATCTCTTATTGAGGATGGAAGAAGAATACATTGAGGAGATTTGCATGCAAATATTGAAGTTTAAACCAGACTTGGTAATTACAGAGAAGGGTCTCAGCGATTTAGCTTGTCATTATCTCAGCAAACATGGAGTTACTGCAATCAGGAGGCTGAGGAAAACTGATAATAATAGAATTGCAAGGGCATGTGGTGCTGTTATTGTGAACAGGCCAGATGAACTGCAGGAATCTGATGTTGGTACTGGTGCTGGGTTATTTGAAGTTAAGAAAATTGGAGATGAGTTCTTTGCATTTATTGTTGATTGCAAAGACCCTAAGGCTTGTACTGTACTACTAAGGGGCGCTAGTAAGGATCTTTTAAATGAAGTTGAAAGAAACCTACAGGATGCTATGTCCGTTGCAAGGAACATAATTAAAAATCCTAAACTTGTCCCTGGAGGTGGTGCTACAGAGTTGACCGTGTCAGCCACTTTGAAACAAAAGAGTTCATCTATTGAAGGCATAGAGAAGTGGCCATATGAAGCTGCTGCAATTGCTTTTGAGGCTATTCCACGTACTCTGGCACAAAATTGTGGAGTAAATGTCATCCGGACCATGACTGCACTACAAGGAAAACATGCAAATGGAGAAAATGCATGGATTGGCATAGATGGAAATACTGGTTCCATCACTGACATGAAAGAGGGCCAGATCTGGGATGCCTACAATGTGAAGGCACAAACATTTAAGACTGCCATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGACATAGTGAGTGGGATCAAGAAGAAGCAGACCCCTGGAGCAGGCCCATCGAAGCCTAAGGTTGAGACTGAAGCAGATGCCGACGGTGAGCAAATCCTTCCTGATTGA 1668 0.4245 MHAPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDIAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLHVAEAFIEKSYHPTVICRAYNKALEDAIAVLDKIAMAIDPQDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGADIGQGLRDVDIKNYIKVEKVPGGQLEDSRVLKGVMFNKDVVAPGKMRRKIVNPRIILLDSPLEYKKGENQTNAELLKEEDWNLLLRMEEEYIEEICMQILKFKPDLVITEKGLSDLACHYLSKHGVTAIRRLRKTDNNRIARACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGSITDMKEGQIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQTPGAGPSKPKVETEADADGEQILPD* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0437 555 PANTHER T-COMPLEX PROTEIN 1 SUBUNIT GAMMA 2 540 - -
Lan3g0437 555 PANTHER CHAPERONIN 2 540 IPR017998 GO:0140662
Lan3g0437 555 MobiDBLite consensus disorder prediction 528 555 - -
Lan3g0437 555 ProSitePatterns Chaperonins TCP-1 signature 2. 57 73 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lan3g0437 555 PRINTS Tailless complex polypeptide 1 (chaperone) signature 33 49 IPR017998 GO:0140662
Lan3g0437 555 PRINTS Tailless complex polypeptide 1 (chaperone) signature 55 73 IPR017998 GO:0140662
Lan3g0437 555 PRINTS Tailless complex polypeptide 1 (chaperone) signature 85 104 IPR017998 GO:0140662
Lan3g0437 555 PRINTS Tailless complex polypeptide 1 (chaperone) signature 373 395 IPR017998 GO:0140662
Lan3g0437 555 PRINTS Tailless complex polypeptide 1 (chaperone) signature 407 419 IPR017998 GO:0140662
Lan3g0437 555 Gene3D - 141 405 IPR027410 -
Lan3g0437 555 SUPERFAMILY GroEL equatorial domain-like 13 525 IPR027413 -
Lan3g0437 555 SUPERFAMILY GroEL apical domain-like 210 378 IPR027409 -
Lan3g0437 555 SUPERFAMILY GroEL-intermediate domain like 142 404 IPR027410 -
Lan3g0437 555 ProSitePatterns Chaperonins TCP-1 signature 1. 36 48 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lan3g0437 555 Pfam TCP-1/cpn60 chaperonin family 31 524 IPR002423 GO:0005524
Lan3g0437 555 ProSitePatterns Chaperonins TCP-1 signature 3. 85 93 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lan3g0437 555 TIGRFAM chap_CCT_gamma: T-complex protein 1, gamma subunit 4 529 IPR012719 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lan3g0437 555 CDD TCP1_gamma 4 525 IPR012719 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Lan3g0437 555 Coils Coil 384 404 - -
Lan3g0437 555 Gene3D GroEL 215 369 IPR027409 -
Lan3g0437 555 Gene3D - 28 523 IPR027413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0437 Lan-Chr3 3810741 3816654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0437 168 414 Acyl Lipid Metabolism Gene Families AT4G33240 28.077 8.26e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0437 K09495 - pvy:116144393 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0514 10 4103154 4109006 Lan3g0437 3 3810741 3816654 LSH