Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0870 ATGGCAGAAAAATCATGCATCAAACGCCTTCAGAAGGAATATAGAGCTCTTTGTAAAGATCCAGTTTCCCATTTTGTTGCCCGTCCTTCACCAAATGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGGTTCATGACTCAGAAAAAGATTTGTTTGTCAATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCTGTATCAAGCATACTTACAGGGCTTCTTTCTTTCATGATGGACAACAGTCCAACCACCGGCAGTGTAAACACCACTACCGCCGAGAAGCAGCGGCTAGCAAAATCTTCCCTTTCTTTCAATTGTAAGAACGCAATATTCAGGAAAATGTTCCCTGAATATGTGGAGAAGTACAACCAGCAGCAGCTTTCTGAGCAAGTTGCTTCCGAGAAGGTATTGTCGGAAGCTTCTCATGACAAAAGTTCAAGTCCTGTTTTGGAAAAGAATTTGAATTCTACAAGGGAAGACATGAAAAAAGTACATGATTTGAAAGAGGTGAGCAAAAAGAAGCAACCATTTCCAACATGGATGATGCTATTACTCTTCTCCATCTTTGGGGTAGTAATGGCATTACCACTACTTCAGCTTTGA 717 0.4059 MAEKSCIKRLQKEYRALCKDPVSHFVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNAIFRKMFPEYVEKYNQQQLSEQVASEKVLSEASHDKSSSPVLEKNLNSTREDMKKVHDLKEVSKKKQPFPTWMMLLLFSIFGVVMALPLLQL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0870 238 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
Lan2g0870 238 SUPERFAMILY UBC-like 5 157 IPR016135 -
Lan2g0870 238 CDD UBCc 7 157 IPR000608 -
Lan2g0870 238 SMART ubc_7 8 162 - -
Lan2g0870 238 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Lan2g0870 238 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 238 - -
Lan2g0870 238 MobiDBLite consensus disorder prediction 173 195 - -
Lan2g0870 238 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Lan2g0870 238 PANTHER BNAA06G11590D PROTEIN 3 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0870 Lan-Chr2 19093687 19098486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0870 1 238 Miscellaneous Gene Families AT1G17280 76.569 4.16e-136 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0870 K04554 - gmx:100778181 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g1028 9 17506505 17511237 Lan2g0870 2 19093687 19098486 LSH