Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0486 ATGATGGCGGTTTCTACATTAGCTTTATATGCAAGTTCACCAAGTAGTGTGTGTTCAACACCTCACCCTTGTCAGATTAACGCACATGCTTCCTATGATTTTGAATTGGGTTCTCGATCTTCCTCGCCGCCGTCGCAAACGGCGGCTTCGACATCGCATAAGCCTGTGGTAATGGGTGGGTTGTCTTGTCTGTTTTCCTCATCGGCGGTTACAAAGCACGCGCCGTTGTCGTCGAGCTTTTCGGGTCCGGTGGGTGATGAATTGGGATCTGAATTGAAGGAATTTAGCAGCAAATTCATTGGATCTTCATCATGGAAAAGAGATCATCATCATCATCATCATCATCAGCATAGCCCTGTTTCTGTTTTCCATGGACCTGTTTCATATAGCAGCAGCAGCACCCTTGGTTCTTCAAGGAGTTTGTTTGATGGGTTTGTGAGGAATGCTTTAGGTTCATGTTTGGATTATGATTCTCCAAGTTTCAAGGTTGATGGTGGTTTAGATGAGTTGACCTTCAAATTGGAGGATACTTTTGTGGATGGTGGTTTTGAATCATATGCTAAGAAGTTACTTCTTGATGCCCAATTGAGGCATAAGATCTTCTGTGAAGAGTTTGTAATCAAGGCTTTTTGTGAAGCTGAGAAAGCTCACAGAGGGCAGATGCGTGCAAGTGGGGATCCGTATTTGCAGCATTGTTTGGAAACTGCTGTGCTACTTGCTTTGATTGGTGCCAATTCCACAGTAGTAGCAGCAGGACTTTTGCATGATACGCTTGATGATTCTTTTCTGACTTATGATTACATATTTGAGACCTTTGGCGCTGGGGTTGCTGATTTAGTTGAAGGGGTTTCCAAACTGAGTCACTTAAGTAAGCTTGCTCGAGAAAATAATACAGCATGCAAGTCGGTTGAGGCAGACCGCCTGCATACCATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAATTAGCAGATCGACTGCATAATATGATGACACTAGATGCATTGCCGGTGGCCAAGCAGCAGAGGTTTGCAAAGGAGACTTTGGAAATTTTTGCTCCTTTGGCCAATCGCTTAGGAATATCTAATTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTCAACCCAGAGCAGCATGAGGAGCTTTCATCGAAGCTTGTGGACTCATATGATGATGCAATGATTACTTCTGCAATAGAGAGATTAGAGCAAGCACTTAAAGATGAAGGCATATCTTATCACGTCCTCTCTGGGCGGCATAAGAGCTTGTATAGCGTTTATTGCAAAATATTGAAGAAGAAGCTATCCATAGATGACATCCATGACATTTATGGGTTGCGCTTGATTGTTGACAAAGAGGAAGACTGTTATAAAGCCTTGACAGTTGTTCACCAATTATGGTGTGAAGTACCTGGAAAGATGAAAGATTACATATGCCGCCCCAAGTTCAATGGGTATCAATCTCTGCATACCGTGGTGATTGGTGAAGGCAAAGTGCCCCTCGAAGTGCAAATTCGGACAAAAGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGACTGTCAGCATTCTTCATTTGTGCTTCAAATGGTTGAGTGGGCTCGATGGGTCGTCACCTGGCAGTGCGAGGCAATGAGTAAAGATCGTTCATCTGTTGGGTGTGCTTATTCAATCAAGCCACCGTGCAAGTTCCCTTCCCATGCAGATGATTGCCCGTATTCTTATAAGCCTGATTGTCGTCAGGATGGGCCCGTGTTTGTAATTATGATCGAGAGTGAAAAGATGTCTGTCCAAGAATTTCGTGCAAACGCAACAGTGATGGATTTGTTGGAAAGAGCCGGGCGAGCAAGCTCGAGGTTGAGAACGTATAGGTTCCCAGTGAAGGAAGAGTTGAGGCCAAGGTTGAATCATGTTCCTGTAAGTGATCCCAAATGCAGGTTGAAGATGGGAGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCCTTAACAGAATACAGAGAAAAAATCCAGCGAATGTATGATCGAGGGCTAACCGTACCGACCACGGGACCTTCTGCAAGCACCATGGTTGGCTCAAGAGGCTAA 2127 0.4429 MMAVSTLALYASSPSSVCSTPHPCQINAHASYDFELGSRSSSPPSQTAASTSHKPVVMGGLSCLFSSSAVTKHAPLSSSFSGPVGDELGSELKEFSSKFIGSSSWKRDHHHHHHHQHSPVSVFHGPVSYSSSSTLGSSRSLFDGFVRNALGSCLDYDSPSFKVDGGLDELTFKLEDTFVDGGFESYAKKLLLDAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDSFLTYDYIFETFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISNWKEQLENLCFKHLNPEQHEELSSKLVDSYDDAMITSAIERLEQALKDEGISYHVLSGRHKSLYSVYCKILKKKLSIDDIHDIYGLRLIVDKEEDCYKALTVVHQLWCEVPGKMKDYICRPKFNGYQSLHTVVIGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSKDRSSVGCAYSIKPPCKFPSHADDCPYSYKPDCRQDGPVFVIMIESEKMSVQEFRANATVMDLLERAGRASSRLRTYRFPVKEELRPRLNHVPVSDPKCRLKMGDVVELTPAIPDKSLTEYREKIQRMYDRGLTVPTTGPSASTMVGSRG* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0486 708 SMART RelA_SpoT_2 422 532 IPR007685 GO:0015969
Lan2g0486 708 CDD HDc 226 354 IPR003607 -
Lan2g0486 708 Pfam Region found in RelA / SpoT proteins 422 531 IPR007685 GO:0015969
Lan2g0486 708 SMART hd_13 224 341 IPR003607 -
Lan2g0486 708 Gene3D Beta Polymerase, domain 2 383 512 IPR043519 -
Lan2g0486 708 ProSiteProfiles S4 RNA-binding domain profile. 646 682 - -
Lan2g0486 708 SUPERFAMILY Nucleotidyltransferase 369 560 IPR043519 -
Lan2g0486 708 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 2 704 - -
Lan2g0486 708 SUPERFAMILY HD-domain/PDEase-like 195 379 - -
Lan2g0486 708 CDD NT_Rel-Spo_like 402 520 IPR007685 GO:0015969
Lan2g0486 708 Pfam HD domain 213 363 - -
Lan2g0486 708 ProSiteProfiles HD domain profile. 228 332 IPR006674 -
Lan2g0486 708 PANTHER - 2 704 - -
Lan2g0486 708 Gene3D Hypothetical protein af1432 187 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0486 Lan-Chr2 5691559 5696359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0486 221 529 EF-hand Containing Proteins AT3G17470 29.794 3.62e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0486 K00951 - gmx:100787301 1125.54