Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0338 ATGGCAGAGAAAGCATGCGTAAAGCGTCTTCAGAAGGAATATAGAGCTCTTTGTAAAGAGCCAGTTTCCCATGTTGTGGCTCGTCCTTCGCCAAATGATATTCTCGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCATTTGCAGGTGGTTATTACTACGGAAAGATCAAATTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGGCGGTTCATGACACAGAAAAAGATCTGCTTGTCCATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCTGCATCAAGCATACTTACAGGGCTTCTTTCATTCATGATGGACAATAGTCCTACCACTGGCAGTGTGAATACCACTACTGCTGAGAAGCAGCATCTTGCAAAATCTTCCCTTGCTTTCAATTGCAAGAATGCAACATTCAGGAAAATGTTCCCTGAGTATGTGGAGAAATACAAAGAACAGCAACTTGCTTCTGAGCGGGTATCACCGAAGATGTCTATCGATGAAAATACAAGGCCGGCACCAGAAAAGGTTTTAGATTTGACGGAGGACGTGAAAAGAGTAGATAGGTTGAAGGATTTGAGGAGAAACAAAAGACAACCATCTCCGACTTGGATGATGTTCTTACTCATATGCATCTTTGGGGTGGTAATGGCATTGCCTCTGCTTCAGCTGTTATGA 708 0.4294 MAEKACVKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSASSILTGLLSFMMDNSPTTGSVNTTTAEKQHLAKSSLAFNCKNATFRKMFPEYVEKYKEQQLASERVSPKMSIDENTRPAPEKVLDLTEDVKRVDRLKDLRRNKRQPSPTWMMFLLICIFGVVMALPLLQLL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0338 235 CDD UBCc 7 157 IPR000608 -
Lan2g0338 235 PANTHER BNAA06G11590D PROTEIN 3 234 - -
Lan2g0338 235 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Lan2g0338 235 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 234 - -
Lan2g0338 235 SMART ubc_7 8 162 - -
Lan2g0338 235 Gene3D Ubiquitin Conjugating Enzyme 1 176 IPR016135 -
Lan2g0338 235 Pfam Ubiquitin-conjugating enzyme 9 131 IPR000608 -
Lan2g0338 235 SUPERFAMILY UBC-like 6 157 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0338 Lan-Chr2 3158138 3161579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0338 1 234 Miscellaneous Gene Families AT1G17280 74.790 6.44e-133 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0338 K04554 - gmx:100778181 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0338 2 3158138 3161579 Lan2g1321 2 24041613 24042619 PCT
Lan2g1321 2 24041613 24042619 Lan2g0338 2 3158138 3161579 PCT