Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0258 ATGTTGCAGTGCATATTTCTTGTCTCCGATTCCGGAGAGGTAATACTAGAGAAACAGCTTACTGGACATCGTGTAGATCGATCCATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAAGGCGATTCCTTCAAGCAACAACCAGTGATTGCTTCACCTACACATTATCTTTTCCAAGTTGTTCGTGATGGAATCACTTTTTTGGCCTGCACTCAAGTTGAAATGCCACCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCCGATGTCCTCAATGATTATCTTGGTGGGTTGAATGAAGATTTGATAAAAGATAACTTTGTCATTGTATACGAGTTGCTAGATGAGATGATAGACAATGGGTTCCCGCTTACGACAGAACCTAATATCCTGCAAGAGATGATAGCTCCACCAAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGTTCTAATGTGAGCGACACCCTTCCAGGTGCTACTGCATCGTGTGTTCCCTGGAGAACAGCAGACCCAAAGTATGCCAACAATGAAATTTATGTAGATCTTGCTGAAGAAATGGATGCAACAATAAACAGGGATGGATTTCTGGTGAAATGCGAGATCTACGGTGAAGTTCAAGTGAACTCTCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTGCAAACCCTTCAATCCTAGATAGTGTGAGGTTTCACCCCTGTGTAAGATTTCGGCCTTGGGAATCCAATCAAATTCTTTCATTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTTAGAAACTTGAAGAACACCCCAATATATGTAAAGCCTCAACTGACCTCAGATGGTGGGACATGCCGTCTTAGCGTATTGGTTGGCATAAAAAACGATCCTGGAAAGACAATTGATGCAGTTACTGTTCAGTTTCAGCTTCCTTCTTGTATCTTATCAGCTGATCTGACTTCAAATCATGGAACAGTGAACATCCTTTCTAACAAGACATGCACTTGGTCCATTGGCCGGATACCAAAAGATAAGTCCCCTTCAATGTCTGGAACATTGGTGCTTGAAACTGGATTGGAGCGCCTTCATGTCTTCCCCACATTTCAAGTTGGTTTTAAGATTATGGGTGTTGCCCTCTCTGGTCTACGAATAGATAAGTTGGATCTGAAGACTGTACCCTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTAAAGCTGGTGAATTTGAAGTCAGGTCATAG 1248 0.4223 MLQCIFLVSDSGEVILEKQLTGHRVDRSICAWFWDQAISQGDSFKQQPVIASPTHYLFQVVRDGITFLACTQVEMPPLMAIEFLCRVADVLNDYLGGLNEDLIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASCVPWRTADPKYANNEIYVDLAEEMDATINRDGFLVKCEIYGEVQVNSHITGLPDLTLSFANPSILDSVRFHPCVRFRPWESNQILSFVPPDGQFKLMSYRVRNLKNTPIYVKPQLTSDGGTCRLSVLVGIKNDPGKTIDAVTVQFQLPSCILSADLTSNHGTVNILSNKTCTWSIGRIPKDKSPSMSGTLVLETGLERLHVFPTFQVGFKIMGVALSGLRIDKLDLKTVPYRFYKGFRALTKAGEFEVRS* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0258 415 Gene3D - 1 142 - -
Lan2g0258 415 CDD AP-3_Mu3_Cterm 167 414 - -
Lan2g0258 415 Gene3D Mu homology domain, subdomain B 272 413 - -
Lan2g0258 415 PIRSF AP_complex_mu 1 415 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan2g0258 415 Pfam Adaptor complexes medium subunit family 167 414 IPR028565 -
Lan2g0258 415 PANTHER CARMINE, ISOFORM A 8 414 - -
Lan2g0258 415 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan2g0258 415 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan2g0258 415 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lan2g0258 415 SUPERFAMILY SNARE-like 1 142 IPR011012 -
Lan2g0258 415 ProSiteProfiles Mu homology domain (MHD) profile. 178 414 IPR028565 -
Lan2g0258 415 PANTHER AP COMPLEX SUBUNIT MU 8 414 - -
Lan2g0258 415 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 414 IPR036168 -
Lan2g0258 415 CDD AP3_Mu_N 3 142 - -
Lan2g0258 415 Gene3D Mu homology domain, subdomain B 167 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0258 Lan-Chr2 2133654 2137453 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0258 K12398 - gmx:100799191 779.63