Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g0207 ATGAACACAGTTCAAATTTCGAAGTTAATCACAGAAAAATTTATAACTCTACTAAACCGTTGCAATAATCAAATCCAAGTTAAACAAATTCAAGCTCAAATCATTCTCCATAATCTTCATTCACACACAACCCTTGCTTCTCATTTCATCACTTCATGTCAAAACCACAATCTTCTCAACACTGCTTTTCATCTTTACACTATTACTCTCCCAAAACCTCATCTTTTCATTTTCAACACTCTGATCAGAGCATTCTCACATTCCCAGATACCCAATAACACCCCTTTCACTATCTACACCCACATGCACCATAATTCCATCACCCCCAACAACTACACTTTCCCTTTCCTTTTTAAGTCTTTGTCTGACTCACGGGAATTCATTCTAGCACAATGTGTTCATACCCATGTGGTTAAATTTTGTTTTTTTGATGATATTTATGTCCAGAACTCGCTCCTTGATGTGTATGCTTCGTGTGGGTGTGCGACGACGTTGTGTAAACAACTGTTTGATGAAATGCCTAAGAGAGATGTTGTGTCGTGGACTGTGTTGATTATGGGGTTTAAGAATGTTGGGAGGTGTGATGATGCTTTGCTTGTGTTTGAACAGATGCAATATGCCGGCGTGGTGCCGAACCAGGTGACAATGGTGAATGCACTGGCTGCTTGTGCTAAATTTGGTGCTATTGAAATGGGAACTTGGATACATGATATGATAAGGAGGAATGAGTGGGAATTGGATGTTACACTCGGGACTGCATTGATTGACATGTATTCAAAATGTGGAAGAGTTGAAGAGGGGTTGAGTGTTTTCAAAAGCATGAAGGAAAGGAATGTGTTTACTTGGAATGCAGTTATTAAAGGGCTTGCCTTAGCTAAGAGTGGGATAGCGGCAATTTACTGGTTTAACAGAATGGAGCAGGATGGAATTAAAGCAGATGAAGTGACTTTGATTTCAGTTCTTTCAGCATGCAGTCACTCAGGTTTGGTTGACATGGGTAGAAAGATCTTTGGATTCTTGAGTAATCGGAAGTATGGATTTCATCCTAATGTCAAACACTATGCATGTATGGTTGATCTGTTTGCACGATCTGGATGTTTACAAGAGGCTATCGAGTTAATGAGATGTATGCCTTTTGAACCAACGAAAGCTATGTGGGGATCCTTATTGGTTGGTTCAAAATCTCAGTGCGACTTGGAATTCAGCGAGTTTGCAGCCAAAAAACTAGTTGAATTGGAGCCAGATAACACTGCCTATTATGTTCATCTGTCAAATCTGTATGCAGAGATGGGAAGATGGAGCGATGTTGAGAAAGTGAGGGCAATGATGAAAGAAAGACAACTGACCAAGGACTTGGGTTTTAGTTCTGTGGAGGTTGAACAAGGATCCAATGTTAGAGAACTTTCGGCATAG 1413 0.4013 MNTVQISKLITEKFITLLNRCNNQIQVKQIQAQIILHNLHSHTTLASHFITSCQNHNLLNTAFHLYTITLPKPHLFIFNTLIRAFSHSQIPNNTPFTIYTHMHHNSITPNNYTFPFLFKSLSDSREFILAQCVHTHVVKFCFFDDIYVQNSLLDVYASCGCATTLCKQLFDEMPKRDVVSWTVLIMGFKNVGRCDDALLVFEQMQYAGVVPNQVTMVNALAACAKFGAIEMGTWIHDMIRRNEWELDVTLGTALIDMYSKCGRVEEGLSVFKSMKERNVFTWNAVIKGLALAKSGIAAIYWFNRMEQDGIKADEVTLISVLSACSHSGLVDMGRKIFGFLSNRKYGFHPNVKHYACMVDLFARSGCLQEAIELMRCMPFEPTKAMWGSLLVGSKSQCDLEFSEFAAKKLVELEPDNTAYYVHLSNLYAEMGRWSDVEKVRAMMKERQLTKDLGFSSVEVEQGSNVRELSA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g0207 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Lan2g0207 470 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Lan2g0207 470 Pfam PPR repeat 252 279 IPR002885 -
Lan2g0207 470 Pfam PPR repeat 354 377 IPR002885 -
Lan2g0207 470 Pfam PPR repeat 280 310 IPR002885 -
Lan2g0207 470 Pfam PPR repeat family 176 224 IPR002885 -
Lan2g0207 470 Gene3D Tetratricopeptide repeat domain 93 249 IPR011990 GO:0005515
Lan2g0207 470 Gene3D Tetratricopeptide repeat domain 252 463 IPR011990 GO:0005515
Lan2g0207 470 PANTHER - 8 463 - -
Lan2g0207 470 TIGRFAM PPR: pentatricopeptide repeat domain 280 314 IPR002885 -
Lan2g0207 470 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Lan2g0207 470 TIGRFAM PPR: pentatricopeptide repeat domain 252 279 IPR002885 -
Lan2g0207 470 Pfam E motif 398 458 IPR046848 -
Lan2g0207 470 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g0207 Lan-Chr2 1729621 1733116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g0207 107 459 Glycoside Hydrolase AT3G49170 32.312 2.67e-55 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g0207 - - lja:Lj0g3v0239469.1 664.455