Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1459 ATGGCATCCCACATTGTTGGATATCCTCGAATGGGCCCCAAGAGAGAACTCAAGTTCGCTCTGGAGTCATTCTGGGATAAGAAGAGCAGCGCCGAGGATTTGCAGAAAGTGGCATCTGATCTCAGGGCATCCATCTGGAAGCAGATGGCTGATGCTGGTATCAAGTACATCCCGAGCAACACTTTCTCATACTACGATCAGATGCTCGATGCAACCGCCTTGCTTGGTGCCGTTCCACCCAGATATGGATGGAGTGGTGGTGAGATTGGGTTTGATACCTACTTCTCCATGGCTAGAGGTAATGCATCTCTGCCTGCAATGGAGATGACCAAGTGGTTCGACACCAACTATCACTTTATTGTCCCCGAATTGGGTCCCGATGTCAACTTCGCTTATGCTTCTCATAAGGCAGTGGATGAGTACAAGGAGGCCAAGGCGCTTGGAGTAGATACAGTTCCAGTCCTCATTGGCCCGGTATCATACTTAATGCTCTCCAAACCTGCTAAGGGTGTTGATAAATCCTTTTCTCTTCTCTCCCTTCTCCCAAAAGTCATTGCTGTCTATAAGGAGGTTGTGGCCGATCTTAAGGCAGCTGGTGCTTCATGGATTCAATTTGATGAACCTACCCTTGTCACCGACCTTGATTCTCATCAGTTGAAAGCATTTACTGCAACATACTCCGAGCTTGCATCTACTTTATCTGGTTTAAATGTTCTCGTTGAGACATACTTCGCTGATATTCCTGCCGAGGCATTCAAGACCCTCACAGCTCTGGATGGTGTCACTGCGTTTGGATTTGATTTTGTCCGTGGAACTAAAACTCTCGATTTAGTCAAGGGAGGATTTCCTAGTGGAAAATACCTCTTTGCTGGTGTGGTTGATGGAAGGAACATTTGGGCTAATGACCTTGCTGCTTCTCTCAGCACATTAAACGCTCTTGAGGGAATTGTTGGCAAAGATAAACTTGTTGTGTCCACCTCCTGTTCGCTTCTTCACACTGCTGTCGATCTTGTTAACGAGACCAAGTTGGATAACGAGATCAAATCATGGCTGGCTTTTGCTGCACAAAAAATTGTCGAAGTAAATGCGTTAGCCAAGGCCTTGAGTGGTCAAAAAGATGAGGCTTTCTTCTCTTCGAATGCCTCGGCTCTAGCTTCAAAGAAGTCCTCTCCCAGAGTGACTAATGAGGGTGTTCAGAAGGCTGCTGCGGCGTTGAAGGGTTCTGATCATCGCCGGGCTACTAATGTTAGTGCCAGATTGGATGCTCAGCAAAAGAAGCTTAACCTTCCGGTTCTCCCAACCACTACTATTGGATCCTTCCCTCAGACTGTAGAGCTGAGGAGGGTGCGCCGTGAATACAAAGCTAACAAGATCTCCGAGGAAGAATATGTAAAATCAATTACAGAGGAAATTCGCAAAGTCGTTGTTCTCCAAGAAGAGCTTGATATTGATGTCCTAGTACATGGGGAGCCTGAGAGGAATGATATGGTTGAGTACTTCGGCGAGCAGTTATCAGGATTTGCCTTCACTGTTAATGGATGGGTGCAATCTTACGGATCTCGCTGTGTGAAGCCACCAATCATCTACGGTGACGTGAGTCGCCCAAAGCCAATGACTGTCTTCTGGTCATCTACTGCTCAAGGCATGACCAAGCGCCCGATGAAGGGAATGCTTACCGGCCCTGTCACCATTCTCAACTGGTCCTTTGTTAGAAATGACCAGCCTAGATCCGAAACTTGCTATCAAATTGCTTTGTCCATCAAGGATGAAGTAGAAGATCTTGAAAAGGCTGGAATCACTGTTATCCAAATCGACGAGGCTGCCTTGAGAGAGGGGTTACCATTGAGGAAGTCCGAGCAAGCTCACTACTTGGACTGGGCTGTCCACTCATTCAGGATCACCAATGTTGGTGTGCATGATTCCACTCAGATCCACACCCACATGTGCTACTCTAACTTCAATGACATTATCCACTCGATCATTGATATGGACGCTGACGTGATCACCATCGAGAACTCTCGTTCGGATGAAAAGCTCTTATCAGTCTTTCGAGAAGGAGTTAAGTATGGAGCAGGAATTGGCCCTGGTGTCTATGACATTCACTCACCTAGAATACCCTCGGCCGAAGAAATGGCCGAGAGAATCAACAAAATGCTTGCAGTTCTTGAGACTAACATTCTATGGGTCAATCCCGATTGCGGGCTCAAAACTCGCAAGTACACGGAAGTGAAGCCAGCGCTCGAAAACATGGTTGCGGCTACGAAAGTTATCCGCAACCAGTTGGGAAAGTAA 2292 0.4708 MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVASDLRASIWKQMADAGIKYIPSNTFSYYDQMLDATALLGAVPPRYGWSGGEIGFDTYFSMARGNASLPAMEMTKWFDTNYHFIVPELGPDVNFAYASHKAVDEYKEAKALGVDTVPVLIGPVSYLMLSKPAKGVDKSFSLLSLLPKVIAVYKEVVADLKAAGASWIQFDEPTLVTDLDSHQLKAFTATYSELASTLSGLNVLVETYFADIPAEAFKTLTALDGVTAFGFDFVRGTKTLDLVKGGFPSGKYLFAGVVDGRNIWANDLAASLSTLNALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKIVEVNALAKALSGQKDEAFFSSNASALASKKSSPRVTNEGVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTVELRRVRREYKANKISEEEYVKSITEEIRKVVVLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSTAQGMTKRPMKGMLTGPVTILNWSFVRNDQPRSETCYQIALSIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQAHYLDWAVHSFRITNVGVHDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSAEEMAERINKMLAVLETNILWVNPDCGLKTRKYTEVKPALENMVAATKVIRNQLGK* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1459 763 Pfam Cobalamin-independent synthase, N-terminal domain 3 315 IPR013215 GO:0003871|GO:0008270|GO:0008652
Lan20g1459 763 PANTHER 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE--HOMOCYSTEINE METHYLTRANSFERASE 1 762 - -
Lan20g1459 763 CDD CIMS_N_terminal_like 3 367 - -
Lan20g1459 763 SUPERFAMILY UROD/MetE-like 398 759 IPR038071 -
Lan20g1459 763 Gene3D - 390 758 IPR038071 -
Lan20g1459 763 PANTHER COBALAMIN-INDEPENDENT METHIONINE SYNTHASE 1 762 - -
Lan20g1459 763 TIGRFAM met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 6 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lan20g1459 763 Pfam Cobalamin-independent synthase, Catalytic domain 432 755 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lan20g1459 763 SUPERFAMILY UROD/MetE-like 3 395 IPR038071 -
Lan20g1459 763 CDD CIMS_C_terminal_like 433 756 IPR002629 GO:0003871|GO:0008270|GO:0009086
Lan20g1459 763 Gene3D - 5 525 IPR038071 -
Lan20g1459 763 Hamap 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 1 760 IPR006276 GO:0003871|GO:0008270|GO:0009086
Lan20g1459 763 PIRSF Met_synth_MetE 1 763 IPR006276 GO:0003871|GO:0008270|GO:0009086
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1459 Lan-Chr20 21317887 21323142 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1459 K00549 - gmx:547643 1398.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0216 5 2696060 2701654 Lan20g1459 20 21317887 21323142 LSH
Lan10g0757 10 10005724 10010810 Lan20g1459 20 21317887 21323142 PCT
Lan5g0216 5 2696060 2701654 Lan20g1459 20 21317887 21323142 PCT
Lan20g1459 20 21317887 21323142 Lan10g0757 10 10005724 10010810 PCT
Lan20g1459 20 21317887 21323142 Lan5g0216 5 2696060 2701654 PCT