Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g2066 ATGAGAATGGAAGTGCAAAGAGTGTGGAATCTAACATCTTACCCACTTAGGCTTCTCTTTCGTCACTCTTCCTCTTACGCATTTCGTCAAACACCTCGCACCCTTCTTATCCGTTCATCCTCTTCTTCAACCACCACTTCCTCCGCCGATAAACCCGCCGCCAGGGCTTCCGCTCGCAACCGCCGTAATCCCTCCACCACTTCAACTTCCGATAGGGAGGCTATTCGAGCCATTCGATTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTCGATCCATATGCTTATGAATGGGACAAAACTCACAGTGCTACTCAGCTACAAGATATATACAGAGATTTAGGAAATGGCGAGGAATCAAATAGTGAGAATGATCATGTATCTGTTGCAGGAAGGATTGTTGCTAGGAGGGCATTTGGAAAACTTGCCTTTTTGACACTAAGAGATGATTCGGGGACAATCCAGCTCTACTGCGAAAAGGAGAGACTCATAGGTGATCAGTTTGAGGATTTGAAGGCACATGTTGATATTGGTGATATACTAGGTGCAAGAGGTTCAATAAAACGCACAGAAAAAGGAGAACTTTCCGTGTGTGTGCTTTCTTTTGCAATCCTTACAAAATCTCTGCTTCCATTGCCTGACAAGTATCATGGTCTAACTGATATAGATAAACGCTATCGCCAGAGGTATGTAGATATGATTGCTAATCCAGAGGTAGCAGATGTATTCCGGAAAAGAGCAAAGGTTGTATCAGAGATACGGAAGACAATGGATTCTCTTGATTTCGTGGAAGTAGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCCGAAGCCAGACCATTTGTTACATATCATAATTCTCTTGGAAGGGACTTATATCTGAGAATTGCAACTGAACTGCATCTAAAGAGAATGCTGGTGGGTGGGTTCGAAAAAGTATATGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGTCACAATCCTGAATTCACAACCATAGAGATGTATGAAGCATACTCAGACTACCAGAGCATGATGAATTTGTCTGAGGAGATCGTCACTCGATGTGCTCTTGCAATTAATGGGAAACTTACCATTGATTATCAGGGAGTAGAGATATGTCTGGAGAGGCCCTGGAGGAGGGAGACCATGCACAACCTTGTTAAAGAAGCTTCAGGCATTGATTTCAATGATTTGGGAAATGATCTTGAGGGTGCAAAAAAAACTACTCTGAGTACCCTTGGAAAGGATCTTGATAACAAGGATAAAGCTTCCATTGAAGCATGCCAATCTGTTGGCCACCTTCTTAATGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAGCCTACATTTGTTTTAGACTATCCAGTTGAAATATCTCCGCTGGCTAAACTACACCGAAGATCCGCAGGTTTGACCGAGAGATTTGAACTTTTCATTTGCGGCCGGGAGCTAGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGAGGACGATTAGAGGATCAAATTAGACAGCATGAAAAGAAGAGAGCAGAAGCTGCTTCAAGAACTAGTGATAAGAAGGAAGGAACAGAAAATGAGGATGACTCATATGAAGTGACTCTTGATGATGACTTTCTAACAGCTTTGGAATATGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATCGATAGGCTGGTGATGCTTTTGACAAACTCTCCCAGTATTCGAGATGTAATCGCCTTTCCGGTACTTAAGGTCCAACAATAA 1779 0.4283 MRMEVQRVWNLTSYPLRLLFRHSSSYAFRQTPRTLLIRSSSSSTTTSSADKPAARASARNRRNPSTTSTSDREAIRAIRLKKVEELRSKGLDPYAYEWDKTHSATQLQDIYRDLGNGEESNSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCEKERLIGDQFEDLKAHVDIGDILGARGSIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVADVFRKRAKVVSEIRKTMDSLDFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLSEEIVTRCALAINGKLTIDYQGVEICLERPWRRETMHNLVKEASGIDFNDLGNDLEGAKKTTLSTLGKDLDNKDKASIEACQSVGHLLNEVFEIFVEPKLIQPTFVLDYPVEISPLAKLHRRSAGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRAEAASRTSDKKEGTENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g2066 592 PANTHER LYSINE--TRNA LIGASE 53 592 - -
Lan1g2066 592 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 243 586 IPR006195 -
Lan1g2066 592 SUPERFAMILY Class II aaRS and biotin synthetases 221 588 IPR045864 -
Lan1g2066 592 Pfam OB-fold nucleic acid binding domain 127 201 IPR004365 GO:0003676
Lan1g2066 592 MobiDBLite consensus disorder prediction 506 537 - -
Lan1g2066 592 Pfam tRNA synthetases class II (D, K and N) 223 588 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lan1g2066 592 MobiDBLite consensus disorder prediction 38 73 - -
Lan1g2066 592 Hamap Lysine--tRNA ligase [lysS]. 78 591 IPR002313 GO:0004824|GO:0005524|GO:0006430
Lan1g2066 592 Coils Coil 505 525 - -
Lan1g2066 592 MobiDBLite consensus disorder prediction 506 540 - -
Lan1g2066 592 CDD LysRS_core 236 589 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan1g2066 592 CDD LysRS_N 126 233 IPR044136 GO:0000166
Lan1g2066 592 PANTHER LYSYL-TRNA SYNTHETASE 53 592 - -
Lan1g2066 592 PRINTS Lysyl-tRNA synthetase signature 258 268 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan1g2066 592 PRINTS Lysyl-tRNA synthetase signature 274 290 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan1g2066 592 PRINTS Lysyl-tRNA synthetase signature 303 316 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan1g2066 592 PRINTS Lysyl-tRNA synthetase signature 321 338 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan1g2066 592 PRINTS Lysyl-tRNA synthetase signature 454 470 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Lan1g2066 592 Gene3D Bira Bifunctional Protein; Domain 2 217 592 IPR045864 -
Lan1g2066 592 SUPERFAMILY Nucleic acid-binding proteins 72 214 IPR012340 -
Lan1g2066 592 Gene3D - 65 216 IPR012340 -
Lan1g2066 592 TIGRFAM lysS_bact: lysine--tRNA ligase 76 590 IPR002313 GO:0004824|GO:0005524|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g2066 Lan-Chr1 35862165 35873848 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g2066 K04567 - gmx:100787720 998.808