Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1497 ATGGCTAGGGTTTTGGCTCAGTCAATTAATATTCCGGGCCTAGTGCCTGGGCAAAGGAATGGTCAACATAAGGGTTCAGGAAAATCTAAAAGACCGGTCAAAATGATGTCTACCTTAACAATGCCTGGAATAAGACTGACAACTTTCTCTGGACTACGTGCTTCTAATCCTTTGGATACTATGTTGAGACCAGCTGGGCAAGATTTTCATTCTAAGGTGTTAACTGCAACTTCTTCGAGGCGAGCACGGGCTAGCAGATGCGTACCTAAGGCCATGTTTGAGCGTTTCACAGAGAAAGCAATCAAAGTAATTATGCTAGCTCAGGAGGAAGCTAGACGGCTCGGTCACAATTTTGTTGGAACGGAACAGATTCTGTTGGGTCTTATTGGTGAGGGCACTGGTATTGCCGCCAAGGTTTTGAAGTCTATGGGAATTAACCTCAAGGATGCACGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACCCCTCGTGCAAAGCGTGTTTTGGAACTTTCACTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCTGAGCACCTGCTTTTGGGTCTTCTACGTGAGGGTGAGGGGGTAGCAGCACGTGTTCTTGAAAACCTGGGTGCTGATCCAATGAATATTCGTACTCAGGTTATTCGCATGGTTGGTGAGAGTGCTGACAGCGTTCCTGCTAGTGTTGGTGGTTCAGGAGGTGGTAGCAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCAGAGGAGGGAAAACTGGACCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTTACACAAATTTTAGGTCGTCGTACCAAAAATAATCCGTGTCTTATTGGAGAACCAGGTGTTGGGAAAACAGCTATTGCTGAAGGTTTAGCCCAGCGGATTGCAACCGGTGATGTGCCTGAGACCATAGAGGGAAAGAAGGTTATAACCCTTGACATGGGTCTGCTTGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAACTAATGGAGGAAATCAAACAAAATGATGATATAATACTTTTTATTGATGAAGTGCACACTCTAATTGGAGCAGGAGCAGCTGAAGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCAAGAGGTGAATTGCAGTGTATAGGAGCTACAACACTGGATGAATATAGGAAACACATTGAAAAAGATCCAGCTTTGGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAACCAACTGTGGATGAAAGCATACAAATATTGAAAGGACTAAGAGAACGCTATGAGATTCACCACAAGCTCCGATATACTGATGATGCACTTGTTGCTGCTGCGCAACTGTCACATCAATATATCAGTGATCGATTTTTGCCGGACAAAGCTATAGATTTGATTGATGAAGCCGGTTCTCGAGTCCGGCTTCGACATGCACAGTTACCTGAAGAAGCGAGAGTGCTGGACAAGGAGGTCAGGCAGATTGTCAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTACGAGATAAAGAAATGGATCTGAAGGCACAGATCTCAACACTTATAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCCGGAGATGAAGGTCCAGTTGTGACTGAAGTTGACATACAACATATTGTAGCCTCATGGACTGGTATTCCTGTGGATAAAGTCTCAGCAGATGAATCTGACCGCCTCCTCAAGATGGAAGATACTTTACACAAGCGAATAATTGGTCAGGATGAAGCAGTAAAAGCCATCAGTCGGGCTATTCGTCGAGCTCGAGTTGGATTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGAAAGTCTGAGTTGGCCAAATCACTGGCTACATACTACTTTGGCTCTGAAGACGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCATACAGTCTCCAAACTCATTGGTTCTCCTCCTGGTTATGTTGGTTACACTGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTATACCCTTGTACTCTTCGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTCGAAGATGGAAGGTTAACGGACAGTAAGGGAAGAACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTTATCGAGAAGGGAGGTCGCAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTATAACCGAATCAAAAGTTTGGTGACTGAGGAGCTAAAGCAATACTTTAGACCAGAGTTTTTGAATAGATTGGATGAAATGATTGTTTTCAGACAACTCACAAAGTTGGAGGTGAAAGAGATAGCTGATATAATGCTGAAGGAGGTATTTGAGAGATTGAAAACCAAAGAGATTGAGCTTTCAGTGACAGAGAGATTTAAGGAAAGAGTGGTTGATGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCGATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGGGAGATTAAAGAGGGAGACTCAGTTATAGTGGATGCTGATTCTGATGGTAATGTGATTGTGCTCAACGGCAGTAGTGGTACACCAGAGTCACTGCCAGAGGCTCTTTCAGTCTAA 2775 0.4436 MARVLAQSINIPGLVPGQRNGQHKGSGKSKRPVKMMSTLTMPGIRLTTFSGLRASNPLDTMLRPAGQDFHSKVLTATSSRRARASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPMNIRTQVIRMVGESADSVPASVGGSGGGSNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIATGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQNDDIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDESIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARVLDKEVRQIVKEKEEAVRNQDFEKAGELRDKEMDLKAQISTLIEKGKEMSKAESEAGDEGPVVTEVDIQHIVASWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEDAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKEIELSVTERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGSSGTPESLPEALSV* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1497 924 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 76 922 - -
Lan1g1497 924 Gene3D - 589 815 IPR027417 -
Lan1g1497 924 Pfam AAA domain (Cdc48 subfamily) 636 810 IPR003959 GO:0005524|GO:0016887
Lan1g1497 924 Pfam C-terminal, D2-small domain, of ClpB protein 817 897 IPR019489 -
Lan1g1497 924 Gene3D UVR domain 503 567 - -
Lan1g1497 924 PANTHER ATP-DEPENDENT CLP PROTEASE 76 922 - -
Lan1g1497 924 Pfam ATPase family associated with various cellular activities (AAA) 299 415 IPR003959 GO:0005524|GO:0016887
Lan1g1497 924 Gene3D - 249 437 IPR027417 -
Lan1g1497 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 641 659 IPR001270 GO:0005524
Lan1g1497 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 686 704 IPR001270 GO:0005524
Lan1g1497 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 715 733 IPR001270 GO:0005524
Lan1g1497 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 748 762 IPR001270 GO:0005524
Lan1g1497 924 CDD AAA 611 759 - -
Lan1g1497 924 Gene3D - 439 583 - -
Lan1g1497 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 903 IPR027417 -
Lan1g1497 924 SMART AAA_5 637 818 IPR003593 -
Lan1g1497 924 SMART AAA_5 294 434 IPR003593 -
Lan1g1497 924 CDD AAA 277 429 - -
Lan1g1497 924 Pfam AAA lid domain 438 539 IPR041546 -
Lan1g1497 924 ProSitePatterns Chaperonins clpA/B signature 2. 671 689 IPR028299 -
Lan1g1497 924 Gene3D - 817 914 - -
Lan1g1497 924 Pfam Clp amino terminal domain, pathogenicity island component 183 234 IPR004176 -
Lan1g1497 924 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Lan1g1497 924 SMART ClpB_D2_small_2 817 907 IPR019489 -
Lan1g1497 924 MobiDBLite consensus disorder prediction 9 32 - -
Lan1g1497 924 ProSitePatterns Chaperonins clpA/B signature 1. 389 401 IPR018368 GO:0005524
Lan1g1497 924 ProSiteProfiles Clp repeat (R) domain profile. 93 235 IPR004176 -
Lan1g1497 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 531 IPR027417 -
Lan1g1497 924 ProSiteProfiles UVR domain profile. 511 546 IPR001943 GO:0005515
Lan1g1497 924 SUPERFAMILY Double Clp-N motif 94 235 IPR036628 -
Lan1g1497 924 Coils Coil 507 527 - -
Lan1g1497 924 Gene3D - 92 240 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1497 Lan-Chr1 25229342 25236064 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1497 K03696 - gmx:100804035 1628.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1497 1 25229342 25236064 Lan1g1497 1 25229342 25236064 ECH
Lan12g0743 12 14667523 14674228 Lan1g1497 1 25229342 25236064 LSH
Lan1g1905 1 34252672 34259309 Lan1g1497 1 25229342 25236064 LSH