Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1451 ATGGATCGAAATCCTAGCTCCTTCAACCACCACTGCATCGCTTCTTTGAGAACCCTAACACCGCACATCACGTGCCTCGCCGTAAATAACAACCTCCTCTACGCCGCATCCGTGAACCTCATCAACGTCTACGACCTCTCCCACTACACTCACGTCGACGTATTCAACGATAACAACCCTTCCTCCGGTTTTGTCAAGTCCATCACCTTCAGCAGCGACGGTTCCAGAATCTTCACCGCTCACCAAGACTGCAAGATTCGTATCTGGCTCATAACCTCATCAAAACGACACCGTGTTCTGTCTTCGCTCCCGACAGTTAAAGACAAATTCCGCCGCTGCATGGTTCCAAGAAACTACGTCAGCGTGAGACGTCATCGAAAGAGGCTTTGGATACAACACTGTGACACGGTTTCTGGTTTGGTTGTGAATGAGGGAGTTATGTATTCTGTTTCATGGGATAAGAGTTTTAAGATTTGGGATTTAGAAAGTTTCCGGTGTTTGGAGTCCGTTAAGGCGCATGAAGACGCTATCAACGCGGTTGTTGTGTCAAATAACGGCACCGTTTACACGGCGTCAGCGGATGGGTACATTAAGGTTTGGGAGAAAGATAATAAGCTGAAAAAACACATGTTAGTTAGAACTATAGGGAAAATGAAATCTACGGTTAATACTCTTTCGCTGAATAAAGATGAGACAGATTTATTTTCAGGTGGTTGTGACGGGGCAATTTGCTGTTGGAAGAGGAAGAAAAACGACGTCGTTAAGATGGAGATTTTGCGGGGTCACGGTGGGGCCATACTATGTTTGATCAACGTCGAGGGTTTATTGGTGAGTGGGTCAACAGATCGGACAGTGAGGATTTGGAAACGTGAAAAGGGGAATAGTGGTATGTATTGTTGCAAGGGAGTGTTGGAAGGGCATGAGAAACCTGTTAAGTCATTGGTGGCATTTACAGGTGGTGAGGGAGGTGACTCAAACGGTGTCGTTAGGGTCTTTAGTGGAAGTCTTGATGGGGATGTTAGGGTGTGGGAGCTGTTTCCTTTGGATTGA 1050 0.4648 MDRNPSSFNHHCIASLRTLTPHITCLAVNNNLLYAASVNLINVYDLSHYTHVDVFNDNNPSSGFVKSITFSSDGSRIFTAHQDCKIRIWLITSSKRHRVLSSLPTVKDKFRRCMVPRNYVSVRRHRKRLWIQHCDTVSGLVVNEGVMYSVSWDKSFKIWDLESFRCLESVKAHEDAINAVVVSNNGTVYTASADGYIKVWEKDNKLKKHMLVRTIGKMKSTVNTLSLNKDETDLFSGGCDGAICCWKRKKNDVVKMEILRGHGGAILCLINVEGLLVSGSTDRTVRIWKREKGNSGMYCCKGVLEGHEKPVKSLVAFTGGEGGDSNGVVRVFSGSLDGDVRVWELFPLD* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1451 349 SUPERFAMILY WD40 repeat-like 8 346 IPR036322 GO:0005515
Lan1g1451 349 SMART WD40_4 9 45 IPR001680 GO:0005515
Lan1g1451 349 SMART WD40_4 208 247 IPR001680 GO:0005515
Lan1g1451 349 SMART WD40_4 124 160 IPR001680 GO:0005515
Lan1g1451 349 SMART WD40_4 163 201 IPR001680 GO:0005515
Lan1g1451 349 SMART WD40_4 252 289 IPR001680 GO:0005515
Lan1g1451 349 SMART WD40_4 297 344 IPR001680 GO:0005515
Lan1g1451 349 SMART WD40_4 48 90 IPR001680 GO:0005515
Lan1g1451 349 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 9 345 - -
Lan1g1451 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Lan1g1451 349 Pfam WD domain, G-beta repeat 60 89 IPR001680 GO:0005515
Lan1g1451 349 Pfam WD domain, G-beta repeat 257 289 IPR001680 GO:0005515
Lan1g1451 349 Pfam WD domain, G-beta repeat 165 200 IPR001680 GO:0005515
Lan1g1451 349 Pfam WD domain, G-beta repeat 300 343 IPR001680 GO:0005515
Lan1g1451 349 Gene3D - 118 348 IPR015943 GO:0005515
Lan1g1451 349 PRINTS G protein beta WD-40 repeat signature 147 161 IPR020472 -
Lan1g1451 349 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Lan1g1451 349 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Lan1g1451 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 289 IPR001680 GO:0005515
Lan1g1451 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 201 IPR001680 GO:0005515
Lan1g1451 349 CDD WD40 15 344 - -
Lan1g1451 349 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Lan1g1451 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 201 - -
Lan1g1451 349 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 345 IPR045182 -
Lan1g1451 349 Gene3D - 2 114 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1451 Lan-Chr1 24454231 24455326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1451 77 344 Acyl Lipid Metabolism Gene Families AT3G18860 22.677 7.53e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1451 - - aprc:113874855 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1451 1 24454231 24455326 Lan1g1451 1 24454231 24455326 ECH