Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1407 ATGGAGTCACAGAATGACGAAAAAGCCCTTCCCACAGTTCATGTCTCCAACATTCCTCAATCCGCCACCGCCAAAGAACTCCTCCAATTTCTCGAATCCATATTCGGTCCTTCCTCTGTCTTCGCCCTCGAAATCCGTTCCCACCATGAAAACTGGAACTCTCGTGGTTCAGGTCGCGTTCAATTCGAAACCCTAGAATCAAAATCCAAAGCCATTACTCTCTCCCTCCAAAACGACCTCGTTTTCATGTCGCATTATCTCCAGGTAACTGAATCCTACGGTGATATCGTTCCTCGCCCTTGCATTCCCCGTAACAGGGTCCGTAACTCCGTTTTGTACGCGGGTTTCATGGTCCGTGATGATCGCATGAGTGTTGTGGAATCGTGGGAAGGGGTTAAAGGTTGGGTCATGCCTGAAAGAAAAAGGGTTGAGTTTTGGGTCCCACATGGTGGAAACTTTTACAAGCTTGAGATCATGTTTGATCACATTTTAGAAGCTCATGGTTATTCTTTTGGAGGAGATTCCAAAATCAATGCTATTGTATTCAAGCTGAAATATGGGCCAAAGATCTATCAGAAAACAGTTGGGCCAAATATAGCAGCAAAGTTTAAAGCTGATAGGTACCACTTCTGCAAGGAGGATTTTGAATTTCTTTGGGTGCGAACAACTGACTTCTCAGCTACTAAGTCAATTGGTCACTCTACATCATTTTGTTGGGAAATTGAGGAAGAGCTATTTGCTTCAGATATTTTTAAAAGCTTCCCACGCTACAGAGAAAATTTGAAAGGTCTCATTCTGGAAGATGGGGAAGAGTTCTGCTCTTCAACTGAAACTGTTCCATTAGTAAAGTGTGGTTCAGATTCTAAATTACCATATGAGATTCTTTTCCAACTTAATTCCCTTGTTCATACCCAGAAACTTAGCCTTGCTTCTGTCGATGATGATTTGATTGACTTGTTAGGAAGCTTAGATGAAGAAACTAAAGCCATTATTTTAGAGAAAATGCATAAGCTGGATTCTACTTGTTACGAGCCCCTAAAATTTGTGAGGACTCAATTACATGTGCTAAGCAGCAGGGGTAGACGTCCTCCACCTTCTTCGCGGAAAAGGTTGACAGATAATAACATAATGAGTTGTCATAGAGCATTGATTACACCATTAAAGATTTATTGCCTTGGTCCTGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTGCAGAATATGCTTCAGACTTCATGAGGGTTACTTTTGTTGAAGAGGATTGGACTAAGCTTCAACCCGATGCAGTATCATGCCGTGCACAAAAGGGAATATCAGTATCAAGTCGTGTGCAAAAGGGAATATCAGTATCAAGGTGTGTGCAAAAGGGAATATCAGTTTCAAGTTGTGTGCAAAAGGGAATATTTCCAAAACCTTTTAGGACTGAAATATATAAGCGGATATTGACTATTCTCCGAGATGGGATTGTAATTGGTTCGAAAAAGTTTGAGTTTCTGGCCTTCTCTGCTAGTCAACTGCGATCAAGTTCTGTTTGGTTGTTTGCTTCTAACGACAATGTGAAAGCAGAAGATATCAGGGAGTGGATGGGATGCTTCAACAATATTCGCAGTGTTTCTAAATGTGCAGCCAGAATGGGTCAGCTGTTCAGTTCGTCCGTGCAAACTCTTGAAGTGCCTGCTCAAGATGTGGAGATTATTCCGGACATTGAAGTTACGACTGATGGTGTAAACTACTGTTTCTCAGATGGTATTGGAAAAATTTCTCAATCTTTTGCAAGGCAAGTTGCTCAAAAGCTTAAATTGGATCAGAGTCGGATTCCATCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTCATTGCCGTTGATCGCCATTCCTATAGGAAGTTATCATTGCGTAGCAGTATGCTTAAATTTGAATCCAACAACAGGATGCTTTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTTTTGTCTACCTTAGGGGTAAAAGACGAGGTGTTTTTGGCAATGCAACAGGAACAATTGAATTTGCTGGGTAGGATGTTGACTGATAGTGAGGCGGCTTTGGATGTTTTGGTAAGTTTAAGTGGTGCTGATTCAAAAAGCATTCTAGTAAAGATGTTACGTGCATATTATGAGCCGAACAGTGAGCCTTACCTATCAATGATGCTTATGGCTCAATATGCATACCAGTTATCTGATTTGAAAAGTAAATGCCGAATTGTTGTTCCCAAGGGTAGGATCTTAGTAGGTTGCTTGGATGAAACTGGTATTTTGAATTATGGCCAAGTATTTGTTCGCATCACTGTGAAAAAAACTAAGGAACAATTTGAAGATGAAAGCTTAAGGAAAGCGGATGGAGATGATTGCACCAGTATAATAGTTGGGAAGGTAGTGGTCACAAAAAATCCTTGTCTTCACCCAGGAGACGTCAGAGTCCTGGATGCTATCTACAGTGAAGAATTAGAGGAGAAGGGTTTGAGGGATTGCCTTGTCTTTCCACAAAAAGGACACAGGCCTCATCCAAATGAATGCTCTGGGGGTGATCTCGATGGAGATTTATTTTTCATAAGCTGGGACAAAGAACTGATTCCATGTGAAATTGTGGCTCCAATGGACTACACAGGAAGGAGGCCTCGTGTAATGGATCATAAGGTGACATTAGAGGAAATCCATCAATTTTTTGTTGATTACATGATCAATGATACTTTGGGTGCTATCTCTACTGCACACCTTGTTCATGCTGACCGTGAACCAAACAAGGCTAGGAGTAGAAAATGTCTAGAGTTGGCAAACCTTCATTCAATGGCTGTTGACTTTGCAAAGACTGGAGCACCTGCTGAAATGCCGAGGGTTTTAAAACCAAAAGAGTTCCCAGATTTCATGGAGAGGGATGAGAAGCCTAAGTATATCTCCAATGGGGTACTAGGGAAACTTTATCGTGCCATAATCGATTCAAATTTGCAAGCAAGGTCGAGCTTTGTCTGGTCAGAGAAGATTGCGGAGGAAGCATATGATCAAGATCTTGAAGTTCGGGGTTTTGAGGTCTTCCTTGAGACCGCATTAAGTCACAAAGAAATGTATGCACAAAAGATGAGCAATTTAATGAACTTCTATTCTGCAGAGACTGAGGATGAAATGCTGACCGGTAACTTGCAAAACCGGGCTACATATTTGCAGCGTGATAACCGTAGATATGGAGATATGAAGGATCGGATTTTAATTGCAGTCAAGAATCTTCAGCGTGAAGCTAAAGAATGGTTTGAAACTAGTTGCCAACAACCTGAATATCAACATTTGGCATCTGCATGGTATCATGTGACCTATCACCCAAGGTATTTCCAGGAAAGCTCCAGCTTTTTGAGCTTTCCATGGATAGTTGGTGACATTTTATTGAATATAAAGTCTGCTAACAGTAAAGCTCAATGTGACAACTTGCTCTAA 3480 0.4121 MESQNDEKALPTVHVSNIPQSATAKELLQFLESIFGPSSVFALEIRSHHENWNSRGSGRVQFETLESKSKAITLSLQNDLVFMSHYLQVTESYGDIVPRPCIPRNRVRNSVLYAGFMVRDDRMSVVESWEGVKGWVMPERKRVEFWVPHGGNFYKLEIMFDHILEAHGYSFGGDSKINAIVFKLKYGPKIYQKTVGPNIAAKFKADRYHFCKEDFEFLWVRTTDFSATKSIGHSTSFCWEIEEELFASDIFKSFPRYRENLKGLILEDGEEFCSSTETVPLVKCGSDSKLPYEILFQLNSLVHTQKLSLASVDDDLIDLLGSLDEETKAIILEKMHKLDSTCYEPLKFVRTQLHVLSSRGRRPPPSSRKRLTDNNIMSCHRALITPLKIYCLGPELETSNHVVKHFAEYASDFMRVTFVEEDWTKLQPDAVSCRAQKGISVSSRVQKGISVSRCVQKGISVSSCVQKGIFPKPFRTEIYKRILTILRDGIVIGSKKFEFLAFSASQLRSSSVWLFASNDNVKAEDIREWMGCFNNIRSVSKCAARMGQLFSSSVQTLEVPAQDVEIIPDIEVTTDGVNYCFSDGIGKISQSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIAVDRHSYRKLSLRSSMLKFESNNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEVFLAMQQEQLNLLGRMLTDSEAALDVLVSLSGADSKSILVKMLRAYYEPNSEPYLSMMLMAQYAYQLSDLKSKCRIVVPKGRILVGCLDETGILNYGQVFVRITVKKTKEQFEDESLRKADGDDCTSIIVGKVVVTKNPCLHPGDVRVLDAIYSEELEEKGLRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKELIPCEIVAPMDYTGRRPRVMDHKVTLEEIHQFFVDYMINDTLGAISTAHLVHADREPNKARSRKCLELANLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERDEKPKYISNGVLGKLYRAIIDSNLQARSSFVWSEKIAEEAYDQDLEVRGFEVFLETALSHKEMYAQKMSNLMNFYSAETEDEMLTGNLQNRATYLQRDNRRYGDMKDRILIAVKNLQREAKEWFETSCQQPEYQHLASAWYHVTYHPRYFQESSSFLSFPWIVGDILLNIKSANSKAQCDNLL* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1407 1159 Gene3D - 1 87 IPR012677 -
Lan1g1407 1159 CDD RRM_SF 13 89 - -
Lan1g1407 1159 Pfam RNA dependent RNA polymerase 384 995 IPR007855 GO:0003968
Lan1g1407 1159 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 460 1153 - -
Lan1g1407 1159 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 8 442 - -
Lan1g1407 1159 PANTHER RNA-DEPENDENT RNA POLYMERASE 460 1153 IPR007855 GO:0003968
Lan1g1407 1159 PANTHER RNA-DEPENDENT RNA POLYMERASE 8 442 IPR007855 GO:0003968
Lan1g1407 1159 SUPERFAMILY RNA-binding domain, RBD 9 95 IPR035979 GO:0003676
Lan1g1407 1159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1407 Lan-Chr1 23810363 23818060 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1407 K11699 - gmx:100808274 1748.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1407 1 23810363 23818060 Lan1g1407 1 23810363 23818060 ECH